RNA id: TU13804


Basic Information

Item Value
RNA id TU13804
length 379
lncRNA type intronic
GC content 0.50
exon number 1
gene id G9235
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3784917 ~ 3785295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCAATATATTGTAGCCTGCGTTATTTCTTTACTAATTCATTTacacatgatttatttaataccatttattcattcagcagATGTTTTTAACCAAAGttatataaaagcaaataacaTGAGCGCTTTTAATGCAAAGTTTCAGatatcatttaaaactgaacGTGCAAGAACGCGGAGAGATTGCATGAAAGTGCataggtttttattatttttgttgtctgtgtttttgttgtttaagtgtttaatgcagcattgtttttaatagattaaataaatactgcattaaaCAGCAGCTagcaaaactaaaatgaatcgTAAGATGCGGTCATAAGATTAgcttatgattatttttttaaacgcgTTTGAGAATGTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13803 lncRNA upstream 250 3784339 ~ 3784667 (+) True G9234
TU13801 lncRNA upstream 4139 3780540 ~ 3780778 (+) True G9232
TU13693 lncRNA upstream 211842 3572437 ~ 3573075 (+) True G9142
TU13692 lncRNA upstream 220678 3563708 ~ 3564239 (+) True G9141
TU13665 lncRNA upstream 260346 3523270 ~ 3524571 (+) True G9130
TU13796 lncRNA downstream 1705 3787000 ~ 3790339 (+) False LOC122355245
TU13810 lncRNA downstream 100787 3886082 ~ 3916483 (+) True G9241
TU13901 lncRNA downstream 227811 4013106 ~ 4021316 (+) True G9302
TU13906 lncRNA downstream 230155 4015450 ~ 4019284 (+) False G9304
TU13907 lncRNA downstream 230155 4015450 ~ 4060976 (+) True G9304
XM_043264309.1 mRNA upstream 120525 3658015 ~ 3664392 (+) True usp14
XM_043264326.1 mRNA upstream 194785 3585341 ~ 3590132 (+) True LOC122362766
XM_043264332.1 mRNA upstream 194785 3585341 ~ 3590132 (+) False LOC122362766
XM_043261096.1 mRNA upstream 200877 3575656 ~ 3584040 (+) True serbp1b
XM_043253673.1 mRNA upstream 222410 3550235 ~ 3562507 (+) False zyg11l
XM_043254140.1 mRNA downstream 28018 3813313 ~ 3875726 (+) True pth1r
XM_043258723.1 mRNA downstream 165988 3951283 ~ 3991543 (+) True slc22a23
XM_043260111.1 mRNA downstream 208096 3993391 ~ 3997726 (+) True tubb2
XM_043217015.1 mRNA downstream 268729 4054024 ~ 4148291 (+) False LOC122323258
XM_043217007.1 mRNA downstream 268730 4054025 ~ 4148291 (+) False LOC122323258
TU13731 other upstream 105983 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 167874 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1045010 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1095290 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1148331 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 436944 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 778602 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 793979 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 1113103 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 1123834 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile