RNA id: TU13810


Basic Information

Item Value
RNA id TU13810
length 858
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G9241
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3886082 ~ 3916483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttTGTGAAATAACCAGAAGTGTTTATTGGCATTACAATGGTTTTTATAGGCAAAGATAAACACAGTGAGAtcctcaaaatatatatatatatatatatatatatatcgctcTGAAAGTACaatttgtgtgttgttttttttttaaatatgaaaaaaggtGCAATAATTACCTCACACGGCAACACAATCGATTGATAAATCTACAAAAGAACGAGCTCCTCTCATTCCTCATGACACTCGCGCcaacttaacaaaaaaaagacttaaaagtTGCTTCAACTCCTGAATATCCTGTTCGACAGCGCTGCATCTGAACCAGTACCATTAATCATTTAGCAGCGGTCAAGTCCCCACGATGTAAAATGTTTGTTACGTTTGTTCTGGAATTTCTTTCTGACATAAACGGTATGAGATTAATCTCTCTTTAGAAGGAGCGAAGGTCTGGAAACCAGAGCAGCAGCTTTTTGTCCAAATTACACGCgtatgaatattttcaaaaaccaaaagaaaaacgCTTTAGGTTGTTTTCATCAGTTTGTTACtgatatgataaataaatagtagttGGCGGCAGCAAAGCAGCTACAATTCGATCACATACTGTACAGCGTTTCTTAAACATGCCCGACAACACATGAAAACACTAACCTCTTTAACAgaggtttattaaaaattatttttaaaaaaatcctaattaTGTTAGCAATAAATACAAGGGGACACCTTATATTAAGGATACAGCAGGAATCAAACGCAGCAGCTctcttcactttttttccagCGCCTTCTGCTCTAATGCCTTCTGCGCTTCTCGAGGTTTGAGAAAATACTCCGTGTACATCGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13796 lncRNA upstream 95743 3787000 ~ 3790339 (+) False LOC122355245
TU13804 lncRNA upstream 100787 3784917 ~ 3785295 (+) True G9235
TU13803 lncRNA upstream 101415 3784339 ~ 3784667 (+) True G9234
TU13801 lncRNA upstream 105304 3780540 ~ 3780778 (+) True G9232
TU13693 lncRNA upstream 313007 3572437 ~ 3573075 (+) True G9142
TU13901 lncRNA downstream 96623 4013106 ~ 4021316 (+) True G9302
TU13906 lncRNA downstream 98967 4015450 ~ 4019284 (+) False G9304
TU13907 lncRNA downstream 98967 4015450 ~ 4060976 (+) True G9304
TU13909 lncRNA downstream 102856 4019339 ~ 4019715 (+) True G9305
TU14012 lncRNA downstream 307108 4223591 ~ 4224111 (+) True G9362
XM_043254140.1 mRNA upstream 10356 3813313 ~ 3875726 (+) True pth1r
XM_043253319.1 mRNA upstream 96449 3756171 ~ 3789633 (+) False LOC122355245
XM_043253327.1 mRNA upstream 96449 3756171 ~ 3789633 (+) False LOC122355245
XM_043253336.1 mRNA upstream 96449 3756171 ~ 3789633 (+) True LOC122355245
XM_043264309.1 mRNA upstream 221690 3658015 ~ 3664392 (+) True usp14
XM_043258723.1 mRNA downstream 34800 3951283 ~ 3991543 (+) True slc22a23
XM_043260111.1 mRNA downstream 76908 3993391 ~ 3997726 (+) True tubb2
XM_043217015.1 mRNA downstream 137541 4054024 ~ 4148291 (+) False LOC122323258
XM_043217007.1 mRNA downstream 137542 4054025 ~ 4148291 (+) False LOC122323258
XM_043216955.1 mRNA downstream 137550 4054033 ~ 4149787 (+) True LOC122323258
TU13731 other upstream 207148 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 269039 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1146175 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1196455 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1249496 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 305756 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 647414 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 662791 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 981915 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 992646 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile