RNA id: TU14006


Basic Information

Item Value
RNA id TU14006
length 5205
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G9356
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4260768 ~ 4266016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGATTTCATTATCATCTGAAGCGTTGACCTGAGCCTCGAGCTCCGTGTCCCTGAAACAACGTAAAAGAGAGCATATCAAAAACATACATGTCAAAATGATGCATAGGTTTCAGCACGGTTCTGTCATTCAGTCGCGCGCGAACACGAGCCGCTGCGGAGACGCGTGGACTGAAATTATGCAACCCATGTGTCAGATGATGTCAGGACGATGAATCACACCTCTACGGCGCGTGCAAGTGCCGAAGGGTGTCGGTCGAATCGCATTTCGGAGACTAAGATGGCACGCGGCTACTCGGATGCGTAAAGATGAGGCTGCGCGCGCGAGTGCGTACCTGGCGGCGGCTGCAGCGCGCGCTCGTGCCGGCCGCAGACAGTCCAGGATAAAGCGCAGCATGTTCACGCGTGACCCACGACAGCCTTCAGAACGCCGTGCCGCTTCCTGCGAGACGCATGCTGCCAAATGAAGATGCGCGGAAGGGACGTGTTCTCCTTGAGTCGCTCTCCGCTCTCCTTCGGCTGCGACGGGGATCACGTGATCGCGGACACTGAACCAGAACCGGCCCCACGGTGCTTGAGGAGGAAGAAAACGGCTCAAAACACCGCCAGTGGTCAATGGCATACATATGCATGGATTATTCGCGGTGTGAAAGATGCAAAAATACAATCGATAGGATAATGAGACGCAGCCTGACGCATTTAGCGAAGAGCCTTTCTGCAGGGGacagtttattataattattattatgtccaCCGCTTACACACAGAATCTTCACTGGTCACATAGTTTCAGAAAGTTTTTGACGCAGTTCTCAATTTTCACTTGCACAAAATGTTATGGCAAAAATGCACGCGTTACATAtcgtgttatttatttttacctatCGTAAGAGGTGCGAGGCATTTTGCATTTCGTGCAATTCTTGGATTGGTGTGTAGagcatataaaaaaagagtttatttaggttttgaaaatgtgcgtGCAtaagtatttgaaaaaaaaatgacaagcaTACAAGTGCATCAATCTGCTTCTCTctgaacatttcatttgttttgtaaaactaCCCAACAACcgagaaatataaatatattattagctTTAAAGGGTGTAGCCTACAGCttttgtgtgtgagtggagtATGTAAAAAGATGAATATTTCTGTGATGAGTTTgtagaaaaaacatttggacTGAAGCAATAAATCATggaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttacattgAACGTGAGACATTAAACTACTTCCCGGTCTGCAAAACTTTACAAATTTTAATCACACCTGAGAACAAATTCTATAAATGCAACATATTATAACACAATATTAGCCTACAACAGAACAAatagtttattttcttcttaaCGCCTTTCCAGCATCTATGGTTATATTAACTCAcagattttacacacacacacacacacacacacacacacataaaggtAGTATAGGTGAGACCGGACACTCAGTGGAATCAAACTAATAAAAGGGCAGATAATGACGATAATTAACTCGACGCACCTCAACAGGATCACGCAGTCAAGGGAAGACAGAAAGCAGgtcacacacagagcacatggggaatgaaaacaacagaaatgctGCAGTTCACCGCCTCCCAGAAGGTGCATCCTCGGACCTGAAACGGAGGGCCGAGGGGAGCCAGATGGAGCCCGAGGGGGCCCTATGGAGCCTGAGGGAGCTTGTGGAGAAGAGGGAGCAAGGAGCCATGGTGGAGCCGATGGGTCGAAGGCCCGGGACTCACAGGCTTGAGGCAGAGACGAGGAATCCTCCAAGCATAATGCCAATGGAGACTCCAGTACACAGATGGAGGTTTGAGAGTGAGCAGCGGGGCCGACCGGTGACAGATGATTGAGGAGACAGGAGGGAAGAAAGGGGCAGATTCGACCTCCAGTCAGATCAGTCTATTAAATCCTCTTCCGCATCCAGCAACCCCCAGATAATTACACGCTCTCCCTGTCCGTGGCATCCTCCACTGTGGCAGGCTGAAAAAAGCTGTCCTAGGCTACAGCGGTCAGCTGAACCATTAAGATGCACTTGAGGTTCTGATGTTTCCCTTTAAGGTATTAATGTGGCCACCTTTTAGGGTAAATGTTCAAATACAGCCAAGGACAGACTGTGTACATGTTTAGATGTTGTCAGATTGAAACACAAGAGGGCAGCACAccctttacatttttcttttaatttgaaagACTATAAAGATTGATGTTCTCAAAATGAAAACTAGAAAACTATTCAAAATCAAGATGGAAAAACACGTGCATGACACTGTTCTTTATTAACTGTTTAATAGCCTCACATCGATCAGACAGTATAATGTAAGCACTATACCCCAGCGATACAATACAATGAGCTCAAAGTCTTCCTTAaagattatttgattattaaaggATATTTACAGCAGACTGTTACTTCACCAAAAACACCTCAtcaacagcaaaaaataaaaacaataaaaaaagtttgatccatataaacatttttaagatcaAATCTTCATTTGTGCAGGAGTTCACGGGACGATGATCATTACACAGCCTTTACGTACTGGAAAACAATcgaatatttacaataattcgTTATCCAAAGTAACTTACAAACGAGcaaaaaaactgcacatttcataaaaaatagcaaaaatatatgCAGTGCCACGAATGCCAGATCTGTAAAACAGCTATAAGAATCAATACAAATGCATCgtaattctttatttattttggtttttccGCTAcaaacatgaatatatttaaggttatggaagtgtgtgtgaaagctcAGAAGGCTCAAAAATCATTCCAGTGATCCAGGAAGTGACCCCCGAGGGCCTGTTAGACAGTGTTGATCCAGAATCAGTCCAGAATGCATATGGATATGGATATTCAATGGGGAGAAACCTGGAAGAGCTTGATTGGATTAAGAGCAAGTGGAGGCGATGTGCCACCGATCTTACCAGGGATGCACTGATATATATCGGCCAAATATCGGTATCGGTAAACGAAACCCTTTTGAAACACAGGCATGATCAGGGCTAATTACATGCTGTGAAACAAAAGGGCACAGTCAGCAAATGCCTCTAATGTAGGGCTGTGGATTAGAAAATACAATCCTATAAAACAATTAGCATTGTTAATGCTAGTTCTATTTGACCCTATGAGCCctattttaatgatataaacACCACGTCTAAAGCACATGGCGCTGGTGCACTCAGGGCTTGTCCAAATCCAAACCGGTCGCCGCCTGGGCACTGTCTCGATGGGTTGTCCCTATTTTCTTAATAAGTAATGGACTCATGGCCGTAGCCAGGGTGctaaaatctttaaaatcactaaaactcTTTAAATGAGACAGAGAtgtagttttgaaatgtttttatagggatgaaaaatgtccaaattatataatgtattgtgTAAAACGtgtgaaaaatgtgaatgttttacTATAGGTTAGGGGTGGATCATTTTATTAAGCATGCAACGATATGCTATACTGTACTATACTGAAAGAAATAGACATCTTCATAGCTagtgtttgcatattttatttaattctgtaaCTTATTCTACGAATCTGTGCACTAGTGTTACTGTTTAAAAAGTTGGTAATGACTCAATAACAATGAGATAGTGTTATATTTGTAGTGTTTTCTTATCAGTTGCGCTATCCTGTCAGCAATAACCTGTCCATGGGATTTTTGGTTGCTGTCAATTTAAGTGCCACCGATGCAGTGTTGCCAggtattgctataaaaataaatgaaaaaatcctaataataataatactaacaataATAAACCCAATTTTTGTAAAGTGTCAAGTAATTTCAGCGTCTCGCAGCGATCATTTAGACCGATCATAACTGTCAACCGCCACAAAACAGCGAATGTTGGAATAAaacttgattttaataaaatgttttcaaaaactACCTCATGTGCAACTTTAATTTAGTTGTATACAAGCATTTgagttttaatttgattatatcTGAAGATAGACagcagttaaataaaacaatccagggttatattattatagaaatgtGTCATGtgattttttcattcaaatgttcACTATTTACTTTGTTAGCGCACACTGCTTAAGGTCGCTTCGGGCGACAAATATTCTAAACTTCCTCTTTAGctctctTCAATATCCCATTTTAGTTGGAAATACATTACAAAGTTGACAGCAACATTCAATTCGCCTGGAGTTTAAGAAAACCAGGGCATTGATGAATTATCGGTTATCGGCTGTATTATCGGTGCATCCCAGACGCTTACAGACTTTGAGGAACCCTCTTATCCACCGAAGCATAGACTTCTGTCTCTATGGCCGCTCCTGCCATCACTCTTCTGGCTGGATGCACCGCCCGTCTGACCTCGTGAACCTCAGTGGACTGCATTATTTCAGTGTTAACCATCTGGGCGGATGGATGGAGTGCACGCTTAACCCCTTGAGCTTTCACGGACTGCATCATTTCAGTGTTGGCCATCTGCATCGCTCCTCCAGTTAGCGAAGACCCTTCGGGCGGCTGCTTGTCAACAAGAACTACGCTCTGGAAGTGCTGCATTTCACGTGTGGCAGAAGCTCCAGAGCCCTTCTTCTGCCCCAGTAACAGGTTCTCCTGAAGGCCTAGGACCGGCCGGGCGTCACCAGCAGAGTCGGCTGGGCTTCCATCACATAAACGGGGGCGGCGGGAGCGTAGTACAGCGCGGGCTGCTGGACTAACAGGGTCTGGTTAGGAACCGTTACTGTATCTTGGACATAGACTCCGGTTGAAGACATGCTGCTGGTCTGCTGCACTCCTGCGGTGCGAACGATGGCAGACGAGCTTGTTTTCTCCTGAGACTGTAAATGACTAGATGTCCCTTGTATGCTGACGTCTTTGTGTGCGGCGGACAGGACCGGTTTGGTGGACACAGGTACGGTGGTGCTGGTTTCAGCCTCTATTGTAGAACCTCTACAGATCTCAGCCAGAGTCTTGAACTTCACATCAAGGTCATCGAGAAAAGCAAAGTCGTCGTCTTCGTGTAAGAGACCGCAGATGTCCTCGAAAGAGCCCTTGTATGATTCCTGACCCTCGTAGTCGTAGATCTTTACACTGTCTCCCTTGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14012 lncRNA upstream 36657 4223591 ~ 4224111 (+) True G9362
TU13907 lncRNA upstream 199792 4015450 ~ 4060976 (+) True G9304
TU13901 lncRNA upstream 239452 4013106 ~ 4021316 (+) True G9302
TU13909 lncRNA upstream 241053 4019339 ~ 4019715 (+) True G9305
TU13906 lncRNA upstream 241484 4015450 ~ 4019284 (+) False G9304
TU14036 lncRNA downstream 113560 4379576 ~ 4379832 (+) True G9379
TU14039 lncRNA downstream 120911 4386927 ~ 4387444 (+) True G9382
TU14052 lncRNA downstream 193077 4459093 ~ 4462067 (+) False G9391
TU14051 lncRNA downstream 195100 4461116 ~ 4462842 (+) True G9391
TU14059 lncRNA downstream 212293 4478309 ~ 4520645 (+) True G9397
XM_043256951.1 mRNA upstream 11767 4243108 ~ 4249001 (+) True rpe65a
XM_043224133.1 mRNA upstream 19692 4232659 ~ 4241076 (+) True gpaa1
XM_043255244.1 mRNA upstream 28414 4224724 ~ 4232354 (+) False si:ch211-188c16.1
XM_043255229.1 mRNA upstream 28414 4224740 ~ 4232354 (+) True si:ch211-188c16.1
XM_043255231.1 mRNA upstream 28414 4224740 ~ 4232354 (+) False si:ch211-188c16.1
XM_043220452.1 mRNA downstream 22002 4288018 ~ 4295033 (+) True ss18
XM_043261508.1 mRNA downstream 39585 4305601 ~ 4376997 (+) False LOC122360677
XM_043261515.1 mRNA downstream 39585 4305601 ~ 4376997 (+) False LOC122360677
XM_043261495.1 mRNA downstream 39753 4305769 ~ 4376997 (+) True LOC122360677
XM_043261503.1 mRNA downstream 39753 4305769 ~ 4376997 (+) False LOC122360677
TU14011 other upstream 37656 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 581834 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 643725 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1520861 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1571141 2675370 ~ 2689627 (+) False LOC122356587
TU14081 other downstream 297881 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 313258 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 632382 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 643113 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 643120 4909136 ~ 4909798 (+) False LOC122355892

Expression Profile