RNA id: TU14214


Basic Information

Item Value
RNA id TU14214
length 551
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G9516
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4624762 ~ 4627170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTCCTCCTTCATCGACACGCACGGGAAAACAACGACAAACACCGGCAGAGCGAGCGGGACACGACACCGAGAGGAGGAGAGGTCCCCGGCTCAGGTGACTGAAGtgtcacgtgatccttcagaaatcacagtAATAcactcatttattatttttcattgttgtgCTGCCcaatatttttatggaagcTGTAAGACTTTCTTCCCAAAAGTCCAAAAGAACGgcattcattaataataataataatgataattataaataataatatttcgtatttactgtcacttttaatgaatttaatgtaTCCTTTATACTATATAATGCAGCAGCTGATGCTAAAATTCAGATTATAGTGATATACTGCAAGTTATTTTCagtggttttaatattttactatattgtTATTAGCTTGCTTATTACTAGAACCTTAGccttttattagtagtaattaaacGCATATTAATGTCTTGTTTCTATATCCGTAATCCGACTCAGTTCCTAAATTTAGGAACTAACtagtaataagaaaaaaatctgaatttattgaggg

Function

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14080 lncRNA upstream 54668 4568633 ~ 4570094 (+) True G9416
TU14059 lncRNA upstream 104117 4478309 ~ 4520645 (+) True G9397
TU14060 lncRNA upstream 142138 4479477 ~ 4482624 (+) True G9398
TU14051 lncRNA upstream 161920 4461116 ~ 4462842 (+) True G9391
TU14052 lncRNA upstream 162695 4459093 ~ 4462067 (+) False G9391
TU14236 lncRNA downstream 26786 4653956 ~ 4654170 (+) True G9536
TU14252 lncRNA downstream 159876 4787046 ~ 4787369 (+) True G9550
TU14285 lncRNA downstream 285825 4912995 ~ 4913362 (+) True G9568
TU14327 lncRNA downstream 447679 5074849 ~ 5111570 (+) True G9596
TU14347 lncRNA downstream 816364 5443534 ~ 5537078 (+) False G9613
XM_043217242.1 mRNA upstream 34935 4572945 ~ 4589827 (+) False mylk4a
XM_043217223.1 mRNA upstream 34935 4580485 ~ 4589827 (+) False mylk4a
XM_043217230.1 mRNA upstream 34935 4580487 ~ 4589827 (+) False mylk4a
XM_043264143.1 mRNA upstream 75159 4540052 ~ 4549603 (+) True si:ch211-241e1.3
XM_043218010.1 mRNA upstream 192043 4423377 ~ 4432719 (+) True LOC122323895
XM_043223980.1 mRNA downstream 257440 4884610 ~ 4885965 (+) True LOC122328338
XM_043223961.1 mRNA downstream 260953 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA downstream 260957 4888127 ~ 4891761 (+) False foxf2a
XM_043261999.1 mRNA downstream 271202 4898372 ~ 4899380 (+) True LOC122361055
XM_043254486.1 mRNA downstream 281963 4909133 ~ 4911176 (+) True LOC122355892
XR_006247003.1 other upstream 36284 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 54668 4563897 ~ 4570094 (+) False G9416
TU14011 other upstream 401650 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 945828 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 1007719 3615482 ~ 3617043 (+) True G9154
TU14280 other downstream 271228 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 281959 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 281966 4909136 ~ 4909798 (+) False LOC122355892
TU14373 other downstream 981157 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 1196823 5823993 ~ 5826286 (+) False dusp28

Expression Profile