RNA id: TU14236


Basic Information

Item Value
RNA id TU14236
length 215
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G9536
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4653956 ~ 4654170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGCCGAACCCCCCACGCCGACATATTTCATCCGCTCCTCTGAGATGTTTGAAGCCTCTGACCCAGCTGGATTCTGCTTTGAGCTGGAATCGTTCAAAGTGTTACAGGACACTAATCATCACGGCAAGCGGCGAGAGACGCCTCCCCGATGCGGCTCCAGGAGGGCCCTTCTTTGATCCCGTTCAGCTTTTATTACCCGCTCGGAGAACATGC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14214 lncRNA upstream 26786 4624762 ~ 4627170 (+) True G9516
TU14080 lncRNA upstream 83862 4568633 ~ 4570094 (+) True G9416
TU14059 lncRNA upstream 133311 4478309 ~ 4520645 (+) True G9397
TU14060 lncRNA upstream 171332 4479477 ~ 4482624 (+) True G9398
TU14051 lncRNA upstream 191114 4461116 ~ 4462842 (+) True G9391
TU14252 lncRNA downstream 132876 4787046 ~ 4787369 (+) True G9550
TU14285 lncRNA downstream 258825 4912995 ~ 4913362 (+) True G9568
TU14327 lncRNA downstream 420679 5074849 ~ 5111570 (+) True G9596
TU14347 lncRNA downstream 789364 5443534 ~ 5537078 (+) False G9613
TU14350 lncRNA downstream 789364 5443534 ~ 5537567 (+) True G9613
XM_043217242.1 mRNA upstream 64129 4572945 ~ 4589827 (+) False mylk4a
XM_043217223.1 mRNA upstream 64129 4580485 ~ 4589827 (+) False mylk4a
XM_043217230.1 mRNA upstream 64129 4580487 ~ 4589827 (+) False mylk4a
XM_043264143.1 mRNA upstream 104353 4540052 ~ 4549603 (+) True si:ch211-241e1.3
XM_043218010.1 mRNA upstream 221237 4423377 ~ 4432719 (+) True LOC122323895
XM_043223980.1 mRNA downstream 230440 4884610 ~ 4885965 (+) True LOC122328338
XM_043223961.1 mRNA downstream 233953 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA downstream 233957 4888127 ~ 4891761 (+) False foxf2a
XM_043261999.1 mRNA downstream 244202 4898372 ~ 4899380 (+) True LOC122361055
XM_043254486.1 mRNA downstream 254963 4909133 ~ 4911176 (+) True LOC122355892
XR_006247003.1 other upstream 65478 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 83862 4563897 ~ 4570094 (+) False G9416
TU14011 other upstream 430844 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 975022 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 1036913 3615482 ~ 3617043 (+) True G9154
TU14280 other downstream 244228 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 254959 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 254966 4909136 ~ 4909798 (+) False LOC122355892
TU14373 other downstream 954157 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 1169823 5823993 ~ 5826286 (+) False dusp28

Expression Profile