RNA id: XM_043261999.1



Basic Information


Item Value
RNA id XM_043261999.1
length 826
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122361055
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4898372 ~ 4899380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgagttttttctgttttctgtagagTCTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGACATAAATGATGATCTCTTCGGTTCTCTTGTTTCTTTTGATGATCTGAGAGAATCTGTTCATCAGCTGAGAGACAAACTGGAGGATTTCTGTAAAGAAGAGCTGAAGAAGATCTCAGACAGAGGTAAAGTCCTGGAGATTGATCTGCTCTCAGAAACCAGTCCATCATCATCTCATATCAGGGAGAACATCATATCAGAAATGTCTTAGGAATGATGCAGGATCATGAGAATAACTCTGTTTCCACAGTCACCTTCACCAACATTGTTCCCAGAACCAGGAACCACTTCCTACAATATTCCCGTCAGTTCACTCTGGATCTGAACACAGTGAATGAACTTCTTCGTCTGTCTGAGAACAACAGAATCGTTCCTCACACTAACACAGTCCagtcgtatcctgatcatccagacagatttgaaggtgtgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGcggatgtgtgtgtatatcagtgtcatataagagcATCAGCAGGAAAGGACGGCGTAATGAAGgtgtgtttggatctaatgatcagtcctggagtttgatctGCTCTCCATCCAGAtactcattcagacacaataaGATAAAGACTGATCTCTCTGTAGAGTCCTGTAGAGtgtttgatgatgatgatgatgatgatgatgatgatggtggtggtatCAGGAGAGTAGGAGTGTTTGTGGATCATGGAGCAGGTCCTTCTACAGCAGCGTCTCTGACATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14252 lncRNA upstream 111003 4787046 ~ 4787369 (+) True G9550
TU14236 lncRNA upstream 244202 4653956 ~ 4654170 (+) True G9536
TU14214 lncRNA upstream 271202 4624762 ~ 4627170 (+) True G9516
TU14080 lncRNA upstream 328278 4568633 ~ 4570094 (+) True G9416
TU14060 lncRNA upstream 415748 4479477 ~ 4482624 (+) True G9398
TU14285 lncRNA downstream 13615 4912995 ~ 4913362 (+) True G9568
TU14327 lncRNA downstream 175469 5074849 ~ 5111570 (+) True G9596
TU14347 lncRNA downstream 544154 5443534 ~ 5537078 (+) False G9613
TU14350 lncRNA downstream 544154 5443534 ~ 5537567 (+) True G9613
TU14345 lncRNA downstream 544228 5443608 ~ 5537078 (+) False G9613
XM_043223961.1 mRNA upstream 6611 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA upstream 6611 4888127 ~ 4891761 (+) False foxf2a
XM_043223980.1 mRNA upstream 12407 4884610 ~ 4885965 (+) True LOC122328338
XM_043217242.1 mRNA upstream 308545 4572945 ~ 4589827 (+) False mylk4a
XM_043217223.1 mRNA upstream 308545 4580485 ~ 4589827 (+) False mylk4a
XM_043254486.1 mRNA downstream 9753 4909133 ~ 4911176 (+) True LOC122355892
XM_043223281.1 mRNA downstream 831225 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA downstream 831225 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA downstream 831226 5730606 ~ 5763859 (+) True pex5lb
XM_043223290.1 mRNA downstream 831227 5730607 ~ 5763859 (+) False pex5lb
XR_006247003.1 other upstream 309894 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 328278 4563897 ~ 4570094 (+) False G9416
TU14011 other upstream 675260 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 1219438 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 1281329 3615482 ~ 3617043 (+) True G9154
TU14284 other downstream 9749 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 9756 4909136 ~ 4909798 (+) False LOC122355892
TU14373 other downstream 708947 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 924613 5823993 ~ 5826286 (+) False dusp28
unassigned_transcript_185 other downstream 1070270 5969650 ~ 5969724 (+) True trnag-gcc_1

Expression Profile