RNA id: TU14350


Basic Information

Item Value
RNA id TU14350
length 1979
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G9613
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5443534 ~ 5537567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACATTTAGGATATCAAGGTTCTAATTGTAAAGCTATTCAGAGCAAACCTTTTGAGCACACAGGTAGACTAGATgggatatgaaaaaaaaaacaacaacaacaacaacaacaactaatgAACAGGAAGACATTGTTACTGGGCAACTCACTTCAGTTTTCCTAAAACTATAACAGCATAATGGTAAGACTAGGACTAGATTCCACTCTGGACTAAATCCTCAGATGGTTAGCATTGCAGTATGGTGTttgcaattataaaaaataaaaaagtcccATTCTCAGATTGCCAGGATGCAGTAGAGGATGGTAGACAGCGTTCCGTCATGAACACAGAAGCAGCATCTATGTGAAATCTACACATACGACACTGAGCATTCTCAAAGCAAGGTCGCCAACAGTCAACACACACCACTGTTACACTTCTATTCAGTTATGCAGAGAAAAAGGGTGCCTTACTTTTCACTGTGGGTTCATTTGCCTAAATCAGTCAGAATTGTGTTAATCATTGGTCACTTTTCAAGCAGATCTATGTATATAGACAGTCAGGTTCAAAAATTAGTATTGTGATGCCAACGATGCCACATCATCACTGTACTACTTTATAGAAGCTACTCTTTGAGACTAGCGCTGTTCCAAAAAGAAACGAAAGTAACATAAGCTGttatttgtggaaaaaataGCTGAGCGCAAAAAAAGGTTCACTTTCATTTGTGCTTTGGTGGTCTTTCTGATGCGTTTTCAAGATTGTGTCTTTACTTTTAGATTGGAAGCAGCATTGTGCAAATcaacataaaaacagttttgtgaCTTTTACTGATGACACCAGCAAAGTCAGTTGGCTTACAAGGTGTGATTCATGagcaaagtacaaaaataataataccaaaCATGGCAGAGAGAGGGTCTTAAGTATATGTCAACATGGGTGACAAAAGATAATAGTTCAACACAAAAGGTCTTTAACATACACATTAATTCAACAACATTTCAACTAGGTCAGAATTCACGAATTCTTACTGTTACAGGTGACCCACACaaaatagattaaattaaaaaggcaaatgTAAAACTGACAAATAATCTAATAAAGACCAACTCAAATCAGATGTATATGTATAAccaaaacatctgaaaatatatacatacttaGAGGCTTTTAAAAGCCTGTTTATTCACCTCTggtttgtaaaattaaaatgaaaaatcacaagCAGCACCTTGTTTTCCATCTTTTGCTAATcaactggaaaataaaaagcagGTTCTTAAGATGTTGACCTGTGACATCTCTATTGCACCCTAGAGAAAGATTTCAGGAGGAGCACAGTCACTGCCTCATATACGCACAcgctctctcacaaacacacacacacacacacacacatataagaTCTGGAGGTAAAATGTGCTAGGATAGAGTCCTTGTTGGCCCTCAGTGTCCCCTCTGTGCTCTCAACATTCTTTTAGGGCATGGGGCTTTTCCAATGCATCAtcgtctgtaaaaaaaaaggaggaaaaaagatTTGATACATAAAATTCACAAAGCACTTAACAATAGGTATCTAAACtaatacatacaatataaataaaaaaaagagaaaacattgaAAAGTTTGCATTATAATTAAAAGCTACACAAGCTATACAAAAATGCCAGGCAAGCATACTGAGATGCAGTCCTGCACAAGCAAATAGTAAAAgtgtataacatttttttttcattatatatactggcagcaataaaaaaaaaaaaaaaaacactgacttcAGAataacacacaattttttttttcttgtagacTCAGCCCCCTGCCTGGAAGTTTTCTTTGAGATTGCAAATGAGCACAGGAACTAAACTGGATTAAAACTATGGACGAGCATGCCTTGAGGCATAATCACTATGTTTATtgactgaaattaatttagAGTTAATACGTCGCTGTACAGGTATTTATTCAGGACAAAAATTCTCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14327 lncRNA upstream 331964 5074849 ~ 5111570 (+) True G9596
TU14285 lncRNA upstream 530172 4912995 ~ 4913362 (+) True G9568
TU14252 lncRNA upstream 656165 4787046 ~ 4787369 (+) True G9550
TU14236 lncRNA upstream 789364 4653956 ~ 4654170 (+) True G9536
TU14214 lncRNA upstream 816364 4624762 ~ 4627170 (+) True G9516
TU14381 lncRNA downstream 39899 5577466 ~ 5591587 (+) False G9632
TU14378 lncRNA downstream 51714 5589281 ~ 5591587 (+) True G9632
XR_006252507.1 lncRNA downstream 66907 5604474 ~ 5607425 (+) True LOC122357632
TU14416 lncRNA downstream 165050 5702617 ~ 5705885 (+) True G9660
TU14417 lncRNA downstream 165050 5702617 ~ 5705885 (+) False G9660
XM_043254486.1 mRNA upstream 532358 4909133 ~ 4911176 (+) True LOC122355892
XM_043261999.1 mRNA upstream 544154 4898372 ~ 4899380 (+) True LOC122361055
XM_043223961.1 mRNA upstream 551773 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA upstream 551773 4888127 ~ 4891761 (+) False foxf2a
XM_043223980.1 mRNA upstream 557569 4884610 ~ 4885965 (+) True LOC122328338
XM_043223281.1 mRNA downstream 193038 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA downstream 193038 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA downstream 193039 5730606 ~ 5763859 (+) True pex5lb
XM_043223290.1 mRNA downstream 193040 5730607 ~ 5763859 (+) False pex5lb
XM_043223372.1 mRNA downstream 227501 5765068 ~ 5779593 (+) False gnb4a
TU14284 other upstream 533736 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 533736 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 544248 4898398 ~ 4899286 (+) False LOC122361055
XR_006247003.1 other upstream 855056 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 873440 4563897 ~ 4570094 (+) False G9416
TU14373 other downstream 70760 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 286426 5823993 ~ 5826286 (+) False dusp28
unassigned_transcript_185 other downstream 432083 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 433952 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 437148 5974715 ~ 5974786 (+) True trnag-gcc_3

Expression Profile