RNA id: TU14373


Basic Information

Item Value
RNA id TU14373
length 879
RNA type TUCP
GC content 0.36
exon number 2
gene id G9630
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5608327 ~ 5609276 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCGAGTCGAAAAAGACACGCTTAGTAGCGTGCAGAGCAGTCGATCGGGGACTTTTGAAGGTTCAGAATGGTGCTGCGGCGGATCTTTCATGCTTTGATAAATAACGCTCAGGTGGTGGAGAAGCTCTCGGAGTCTCGACCTATCAGACGCGCGGCGCAGATCACGGCCTTCGCCATCACTAAAGCGCAGATCGCCGGCAAAGACGCCTCGACCAAGCTGCTCAGATCCCAGACTTTTCGCCAGATACGCGAGGAGACGTCAAAAATGCCCAGGAACGTGGAAGAGGTGGGCCGGAGAGCTAATAGACTACGGGATACGTTTGTGAAGGAAGTGAAAGAAGGAATGAGAGACGCCGACAGacaaataaaaggcaaaaagtGACTGAATGGGTGAACCTTATATTCATGTCGTTATTACGATTCCATTTGTGAATAGGAGGAAAGCGTTAAAGACTTCGTTAAGAGCGTTCTGCTGGGGTTTTATGGCCctcaataaactaaattaaatgaaaaccacTGTTAATTCTGTAAGTGTTGGTAATGATGCTTGAATGGCTGCATGTACGTGCCttgttgtgaaataaatgaaagctttgCGATTAGTTATGCCACCTTACTGAGAACATTtgaaaccaaaacattttaaacatacaaacattttatgatCTCCACGAGGAATGCATTGCAGATATGACGTCTGTGTGACGTGGCATGGTGTTTGTCCAGCAAAAACATCTCAAGCTTTGTTAAAATTAGAAGTgcctaaatgaaagaaaatgtagtattaacctttttttcccATGGCCTCTTGTTAGTTTTTACACTGAAGTGTGCTATTGTTTGACACTGACATATAACAGTTGATAACTAAAAAcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252507.1 lncRNA upstream 902 5604474 ~ 5607425 (+) True LOC122357632
TU14381 lncRNA upstream 16740 5577466 ~ 5591587 (+) False G9632
TU14378 lncRNA upstream 16740 5589281 ~ 5591587 (+) True G9632
TU14350 lncRNA upstream 70760 5443534 ~ 5537567 (+) True G9613
TU14347 lncRNA upstream 71249 5443534 ~ 5537078 (+) False G9613
TU14416 lncRNA downstream 93341 5702617 ~ 5705885 (+) True G9660
TU14417 lncRNA downstream 93341 5702617 ~ 5705885 (+) False G9660
TU14420 lncRNA downstream 107902 5717178 ~ 5717406 (+) True G9663
TU14431 lncRNA downstream 115425 5724701 ~ 5725016 (+) True G9671
TU14425 lncRNA downstream 160782 5770058 ~ 5831115 (+) True G9667
XM_043254486.1 mRNA upstream 697151 4909133 ~ 4911176 (+) True LOC122355892
XM_043261999.1 mRNA upstream 708947 4898372 ~ 4899380 (+) True LOC122361055
XM_043223961.1 mRNA upstream 716566 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA upstream 716566 4888127 ~ 4891761 (+) False foxf2a
XM_043223980.1 mRNA upstream 722362 4884610 ~ 4885965 (+) True LOC122328338
XM_043223281.1 mRNA downstream 121329 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA downstream 121329 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA downstream 121330 5730606 ~ 5763859 (+) True pex5lb
XM_043223290.1 mRNA downstream 121331 5730607 ~ 5763859 (+) False pex5lb
XM_043223372.1 mRNA downstream 155792 5765068 ~ 5779593 (+) False gnb4a
TU14284 other upstream 698529 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 698529 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 709041 4898398 ~ 4899286 (+) False LOC122361055
XR_006247003.1 other upstream 1019849 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 1038233 4563897 ~ 4570094 (+) False G9416
TU14467 other downstream 214717 5823993 ~ 5826286 (+) False dusp28
unassigned_transcript_185 other downstream 360374 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 362243 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 365439 5974715 ~ 5974786 (+) True trnag-gcc_3
unassigned_transcript_188 other downstream 368639 5977915 ~ 5977989 (+) True trnag-gcc_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030473 True 552 lncRNA 0.52 2 NC_007113.7 4894856 ~ 4898290 (+)
grasscarp (Ctenopharyngodon idella) CI01000003_00719773_00720087.mRNA True 750 mRNA 0.44 1 CI01000003 719583 ~ 720332 (-)