RNA id: TU14381


Basic Information

Item Value
RNA id TU14381
length 2151
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G9632
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5577466 ~ 5591587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttTTCAAGCTTTTTATTAATCACTTGCAGACTTATCATAAAACTGAGAATCAGTGCACGTGTAATGCTATAAACCAATTTTGTCTATAACAAAACGAGTACTGACAAAGCATTCTTCAGAAACAGGTTTTAAGATATGGATATACATAGACAATTGTGAAACTGCAAGTCATTACTAACAGAGTATAGAATACTctttaatttcatatatatatatatatatgacctgTAAGTCTTACATGACATGAGTGTTTCTCACTTTTCGATtcatttttgtgtctttttacaACCATGGTATAACAGATGATACTGGTATCAAAAGGTGAATCTTAAAACCAATTAGCCGAATAGATTTATAATTTAATCTCACTCCGATTTGCAAGTAAAACAGCAAAAGTGAAGTTAAGTACAAGAAagaacaaagaagaagaaaaaagaaaatatttgaaaggCTTGACCATAATCTCCAAGGCAGAAATAACAACacaccaaaaacaaaagaactATGAAAACCGAATaagagaacagaacagaatctTTCAGAAGCCCATGACAGGATCTTACAGAGAATGTTTCTATAGTCTTTTATTTCTGCTGTGATCATCACCCACTCCATATTTGCTTAATCCAATGCTTAAGAAGGTAACAGCACTTCACTGTGTATGAAAAACTGACGGATTACATGACTCACAACAGATAACTACTATGGTAAGAGTGTGAATATAGATGATTTTGTACATCATCATGGGAAACACAGTTCCCAATACTTACATCCACATCACAGTGAAATATGAGGGGCACTGCCCTCGATATCAACACATCGGTAGGCAAAAACTACCATCATCTTCGCATTATGGAAGGCACTGCTCCCGATAATAATTCTGGATCAGGTAACATTGATTCAAAAGGAGAGTGCCAAAGACTGATACATAGCAGTAActtactgatttttttaattatcatttaagaAATACAATGTAGTCTGTGGTCATAGCTTTTGAAAACAAGGTCATATCCATAGCAGATGCTGCTTTCACATTTCGACAGTATAACTGTCATAATTATGGAAGGCACTGCTTCCgataattatacatttgtttaaaaaaaggcggtacaaaatgctatttatagTGATCCCTGtcactgataaataaaaaaactaataaatagaATTTCTGAGCCACATAGGAAAGCCTCTTTCTATTTGACAGAATTGATCCAAAGAGCCCCTGAAAAAGTGTATCCAACCAGAAAGTTGGAAAAATACTGTACTTTACGAGGTGTTTTATGATCACAGGTAAGTTAGgttacaaacattaaaatgtcaatgGTTGATTGTCTAACTGGAGTCTGTATAAAAACCCCTCTAAATCCAGACTGTTCAGGTATTATGCAAGAAGTTCCTAAAAGGAGtctcaaaaaaaagattttgaaaataaaccagTAACACATTCCGAATTTGTATAATCAAAACTAGATCTCAAAGAAAAACTTCCTCCAAGAATGAGTTTTCTACCTTCATGTCAATCAAACCCCTTATGAATTTTGATCTATGATGCAGAGGGTGAATTATAGCACATGAGTGATGGGAGCTACTTTTATAATATGTTACGCccctgtgtctttttttaagtttgatagctgcagttattattattgtatactTCAAACATCTTTCACAGAAGgggtctggaatgacatgaagatgagtaaatgacacaatgtttcatttttggatcAACTACTGCTGTAAATACTGATGTAAACCACTTATCCTAAATTCACGTTAATAGAGcaccaaaatcattttttgctttaattttcctttttttccttgaGTGATGGGTTCAAAGCTATCACACAGTTAAAGAGGTGAGTTGATTCCACTTGTCTAAATTTCATTATCCATATCCCATACTTCCCCTGCTAATGCATTGGCACAGCCCTGGATGGTCCAAGTGGCAAGAGCAAACTGATTCTTGAATTGGTCGATGTCAGCAGATTCAAGCCCTCCTTTAATAGCTTCAAGGTGATCCACCAGAGCTGCCAGAGTGTGTGATCCGGAGCCCAGCAGAATGTGCCGGAATAGACTCTCCCGCGGAGACACGTAAGGAGAGAGAAAACTGCTTTCCACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14350 lncRNA upstream 39899 5443534 ~ 5537567 (+) True G9613
TU14347 lncRNA upstream 40388 5443534 ~ 5537078 (+) False G9613
TU14345 lncRNA upstream 40388 5443608 ~ 5537078 (+) False G9613
TU14346 lncRNA upstream 40388 5443608 ~ 5537078 (+) False G9613
TU14327 lncRNA upstream 465896 5074849 ~ 5111570 (+) True G9596
XR_006252507.1 lncRNA downstream 12887 5604474 ~ 5607425 (+) True LOC122357632
TU14416 lncRNA downstream 111030 5702617 ~ 5705885 (+) True G9660
TU14417 lncRNA downstream 111030 5702617 ~ 5705885 (+) False G9660
TU14420 lncRNA downstream 125591 5717178 ~ 5717406 (+) True G9663
TU14431 lncRNA downstream 133114 5724701 ~ 5725016 (+) True G9671
XM_043254486.1 mRNA upstream 666290 4909133 ~ 4911176 (+) True LOC122355892
XM_043261999.1 mRNA upstream 678086 4898372 ~ 4899380 (+) True LOC122361055
XM_043223961.1 mRNA upstream 685705 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA upstream 685705 4888127 ~ 4891761 (+) False foxf2a
XM_043223980.1 mRNA upstream 691501 4884610 ~ 4885965 (+) True LOC122328338
XM_043223281.1 mRNA downstream 139018 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA downstream 139018 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA downstream 139019 5730606 ~ 5763859 (+) True pex5lb
XM_043223290.1 mRNA downstream 139020 5730607 ~ 5763859 (+) False pex5lb
XM_043223372.1 mRNA downstream 173481 5765068 ~ 5779593 (+) False gnb4a
TU14284 other upstream 667668 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 667668 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 678180 4898398 ~ 4899286 (+) False LOC122361055
XR_006247003.1 other upstream 988988 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 1007372 4563897 ~ 4570094 (+) False G9416
TU14373 other downstream 16740 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 232406 5823993 ~ 5826286 (+) False dusp28
unassigned_transcript_185 other downstream 378063 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 379932 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 383128 5974715 ~ 5974786 (+) True trnag-gcc_3

Expression Profile