RNA id: XM_043223488.1


Basic Information

Item Value
RNA id XM_043223488.1
length 1037
RNA type mRNA
GC content 0.40
exon number 4
gene id dusp28
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5823993 ~ 5826286 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCGATTGCCATAAATAAACGGAAGGTGAGATTTGAATAATTTCATACCTCTCCAGACACTTTTGCCaacaaattgtaaataaattatcCAACTGAGTTATTTGGACTACAAAGgtcaaactgtttttgttttccagcGACAAAACGTCAGCATAGACATCAAATCTAGATTGGCTCAACTGTATGTCAAGCTTGGGTTTCAAGTAACAGAGCTATTTTAAATCTACACTGGTTACTGAAGGAGAGGAAAGCGAATATTGGTATAAATGGGCGGGGTAAATTAGCTGCATGTGCGTTCACTTCACGTTTTTCCTGTCATTGGGACTGTTGTGGCGAACAGGATGAGGAAGGTCTGACACATCCGCTTCGAGGATCATCCCCATGCCTAATCTGCAGCTCACAAGACTTTTCTGTCAACCTTTTCCCTCTATGCGGGTAAGCACTTTGCGTGTACCTGTATATGATGACCCTCAAGAAGACCTATACAAGTATTTTGACCACTGTGCTGATGCCATAGCCAGTGAGGCAGAAAGGGGAGGCCGCACTGTTGTGTATTGCAAGAATGGACGGAGTCGCTCAGCTACTGTCTGTGTGGCCTATTTAATGAAGCATCAGGGTCTCACCTTGACAGATGCCTTCCAGGTAGTAAAAAGTGCCAGATCAGTAGTTGAGCCTAACCCTGGATTCTGGACTCAGCTGGAGCGATATGAACAGGAGCTGAAGATCAGGAAATCGTCCAGCCACAGATGTAACCTCTCTCCACTTTGACTTCATACCAACATTTTCTGATATGACAATCTCAACAAAATCTTCAGGAGTTTTATAATAGCTAAGGCTTTAGACATGTCGCTGTTCAAGctttcttcaaataaaaaatgccatataataacaataataatgatacgTGCCTTGAATGATTAtaaagtgctttgatgcaacctgtgttgttaaaagcactatataaataaaaatgattgattgattgataaagtGTGATAacgattatattatattttaaaaagaaaaaggagtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14431 lncRNA upstream 99138 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 106748 5717178 ~ 5717406 (+) True G9663
TU14416 lncRNA upstream 118269 5702617 ~ 5705885 (+) True G9660
TU14417 lncRNA upstream 118269 5702617 ~ 5705885 (+) False G9660
XR_006252507.1 lncRNA upstream 216729 5604474 ~ 5607425 (+) True LOC122357632
TU14470 lncRNA downstream 6107 5832357 ~ 5832690 (+) True G9690
TU14472 lncRNA downstream 26019 5852269 ~ 5859952 (+) True G9692
TU14477 lncRNA downstream 315792 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 549893 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 676140 6502390 ~ 6502594 (+) True G9825
XM_043223424.1 mRNA upstream 15606 5807171 ~ 5808548 (+) True sft2d3
XM_043223404.1 mRNA upstream 23283 5794226 ~ 5800871 (+) True si:ch1073-184j22.1
XM_043223413.1 mRNA upstream 23283 5794226 ~ 5800871 (+) False si:ch1073-184j22.1
XM_043223372.1 mRNA upstream 44561 5765068 ~ 5779593 (+) False gnb4a
XM_043262112.1 mRNA downstream 10398 5836648 ~ 5838633 (+) True LOC122361161
XM_043219558.1 mRNA downstream 409620 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 422798 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 431301 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 449766 6276016 ~ 6337572 (+) False fgf12a
TU14373 other upstream 214878 5608327 ~ 5609276 (+) True G9630
TU14284 other upstream 914356 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 914356 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 924868 4898398 ~ 4899286 (+) False LOC122361055
XR_006247003.1 other upstream 1235676 4579274 ~ 4588478 (+) True mylk4a
unassigned_transcript_185 other downstream 143400 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 145269 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 148465 5974715 ~ 5974786 (+) True trnag-gcc_3
unassigned_transcript_188 other downstream 151665 5977915 ~ 5977989 (+) True trnag-gcc_4
unassigned_transcript_189 other downstream 154913 5981163 ~ 5981233 (+) True trnag-gcc_5

Expression Profile