RNA id: XM_043216955.1


Basic Information

Item Value
RNA id XM_043216955.1
length 5997
RNA type mRNA
GC content 0.54
exon number 23
gene id LOC122323258
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4054024 ~ 4149787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAACAGTTGTTGAGAGCAGAGCCTGGCGCGGGGTTTATGGCCCCTCGCGCGGGGCTGGGTTTGTAGGCCAGGTGCCGCTCCGCTCCGCTCCAGGCCGGGTTTTCCAGCGCGCCTCTGCAGTGAGACGCGCAGCCGGCTCGACGCGCAAAGCCGTCTCTCTGCTCCGGGATCGCGGCGCGCTTTCCGCAGCACCCGACGCCTGGAATTTGCTCAAGTTTTCGTCAAAAGCGCTTTTTCCCCCCTCGTCCGAGCGCGCGGCGGGGCGTTCAGAGGGAACCCGGTCGGGCCACCGCGGCGACGGAAGGGCGCGTGGCTCTGATTCGAACGCGCGTTCGTCGCGCTCTGCCCCGAACCGAGCGCTGCGTGGAGCGGGACGACTCCGGCTGCTGAAAACGGCGAAATGCTCCTTTTAAACGCGACCTGGGCGCTCGCTCGCCTCGCCTCTCCGTGTCCGTAGGCCTAATGCGGTTTGGTTCGTGGACCGCGCGGATCTGCGATCTACCTGAGCGCGCGATGAAAGTCTTTGTGCGCTGATTTAGAGGTGACTTAGAGAAGCCCTGGCTCTCGATTGCGTCGATACGTCTGCTGGGACTCGATCCACGGAGCATGAATGGTGAAGGGCGGAGAAGAGAGGATTGCTGATGTCAGCGTGGCCTGAATGCTGTCTACGTCTACTTTACTATCTCAACTATTGCCTGGCATCTGGAGACGCTCTTCAATAACCAAAATGGCTACTTCACTGTGGAAAAGTCCCCTGGTGCATGGACTTGTGTTAACTGTGATTTTTATACAATCTTCAGAAGCCTTCAGTCGTGCAGCGCTGCCGTTCGGTCTGGTGCGGAGGGAGCTGTCCTGCGAGGGTTACCCCATCGACCTGCGCTGCCCGGGGAGTGATGTCATCATGATCGAAACCGCCAACTACGGCCGCACAGACGACAAGATATGCGACGCCGACCCCTTCCAGATGGAGAACATTAATTGCTACCTCCCGGATGCCTATAAAATCGTATCTCAAAGGTGTAACAATCGGACACAGTGTGTCGTCATCACTGGCTCGGACATCTTCCCAGATCCCTGTCCTGGGACATACAAGTATCTTGAGGTCCAGTATGAATGTGTGCCATACAAAGTGGAGCAAAAAGTTTTTATTTGCCCTGGGACTCTGAAAGCAGTAGGAGACCCAGCCTTTGTCTTTGAGGCGGAACAGCAGTCTGGAGCTTGGTGCAAAGACCCCCTGCAGGCGGGGGACAAGATATACTTCATGCCATGGACTCCGTACCGCACCGACACGCTCATAGAGTACGCCTCGCTTGACGATTTACGAAGCGGCCGACAGACGACTAACTACAAACTTCCCCACCGAGTTGACGGAACCGGATTTGTGGCCTACGACGGGGCCATCTTCTTCAACAAGGAGCGCACAAGAAATATAGTCAAGTTTGACTTGAGGACTCGGATAAAGAGCGGGGAGACCATAGTCACCAATGCCAACTACCATGACACGTCGCCGTATCGCTGGGGCGGGAAAACGGACATCGATTTGGCGGTTGACGAGCGGGGACTGTGGGTTATCTACGCTACCGAACAGAATAACGGACGTATCGTTCTCAGCCAACTCAATCCCTATACTCTGCGCTTTGAGGCCACTTGGGAGACCGTCTACGACAAACGCTCCGCATCCAATGCCTTCATGGTGTGCGGTATTCTTCACGTGGTCCGTTCCACCTATGAGGAGAACGAAAGCGAGGCCAGTAAGAGCCAAATTGACTATGTGTATAACACCAAACTGGGGCAAGGGGAGTATGTCAATATCCTCTTCCCTAACCAGTATCAGTACATCGCAGCTGTGGATTACAACCCAAGGGACAACCAGCTATACGTGtggaataatttttacattctgCGATACAACCTGGAGTTTGGGCCGCCTGATCCAGATGAAGTCCCGACGGTCTCTGATTATATAACATCAACGCTGCAGCCCAGACGATCCACAGCTCCCATCAGGACCACGCCGATCAGCATCACCCAGAGACCGGCGCTCAACAGCAGCGTGACGCCGGACCCCGGGGCCGTGGACCGCCCCGGCCCGCCGCCGGACCCCAGCGCCGTCAGCCCGCCGCCCTCCAGCAGACGCTTCTGTGACGGGACGGAGCGGAGAGGCATCTCCTGGCCTCAGACGCACCGCGGAGCCACGGTGGAGCGGCCCTGTCCCAAAGGCACTCGAGGCATCGCTCTGTTCCTCTGCACGTCTGCCGATGGGATCTGGAGCCCCAAAGGTCCTGATCTCAGTAACTGCACGTCTCACTGGGTGACGCAGGTGGCGCAGAAGATCCGGAGCGGCGAGAACGCAGCGAACCTGGCGAACGAGCTGGCGAGGCACACGCAGGGCCCCGTGTACGCCGGGGACGTCAGCTCCTCGGTGCGCCTCATGGAGCAGCTGGTGGACATCCTGGACGCTCAGCTGCAGGAGCTCAAGCCCAACGATAAAGACACGGCCGGACGGAGCTTCAACAAGcgccaaaaaagagagaggactTGCAGGGCCTATATGAAGGCCATTGTGGACACGGTTGACAACCTCCTGAGGCCAGAAGCCCTTAAATCCTGGGAGGACATGAATTCCACAGAGCAAACACATGCCGCCACTATGTTACTCGATACCCTGGAGGAAGGAGCCTTTGTCCTCGCAGACAACCTGATCGAGCCCGCTGTCGTCAGAGTGCCTGCCGAGAACATCATGCTGGACGTGTACGTGTTGAGCACCGACGGCCAAATTCAGGACTTCAGGTTTCCGCAGACCAGCAAAAGAGGAGCCACAATTCAGCTCTCGGCGAACATGGTCAAGCTAAACAGTAAAAACGGTGTTGCCAAGTTGGTCTTTGTCCTCTATAAGCACTTGGGACATTTTCTCAGTACTGAGAACGCTACGGTGAGACTGATGGGAGAGGGCGGAGTCAGAAACCACACCCTCACTGTAAACTCCCACATCCTCTCCGCCTCCATCAACAAAGAGTCCAGCCGCGTGTTTGTGGCCGAACCGCTCATCTTCACTCTGGCACATTTGGATACTGAGAACTACTTCAATCCAAACTGCTCATTTTGGAACTATTCTGAGCGGAGCATGATGGGATACTGGTCAACGCAAGGATGCAAGCTCCTCGCCACGAACAAGACTCACACCACTTGCTCCTGCAGTCACCTGACCAACTTCGCAATCCTGATGGCCCATCGAGACGCACATGCGAGTATGGGAAGCGTTCACGAGCTCCTGCTGACAGTTATCACACGAATGGGCATCGCCATTTCACTTGTCTGCCTAGCCATTAGCATCTTCACCTTCTGCTTCTTCCGCGGCCTCCAGAGTGATCGCAACACCATCCACAAGAACCTCTGCATCAACCTCTTCATCGCAGAGCTCCTGTTTCTTGTGGGCATCAACATGACCGAACCTCCGATTGTGTGCTCTGTGATTGCTGGAGTTCTGCATTTCTTCTTTCTTGCCACCTTCGCCTGGATGTGTTTGGAGGCTGTTCAGTTGTTCCTCATGCTCGTGGAGGTCTTTGAGAGCGAATTCTCCAGACGAAAATACTACTACGCGTCTGGCTACCTGTTCCCCTGTGTGGTGGTTGGCATTTCGGCAGCCATTGACTATAAGAGCTATGGGACAAGGAAAGCCTGTTGGTTGAGGGttgaaaatcatttcatttggaGTTTCATTGGCCCAGTTACGTTCATCATTATGCTCAATCTCATCTTTCTGGTGGTGACTATGTACAAGATGGTGAAACACTCAATGTCTATGAAACCTGATTCCAGCCGACTGGAGAGCATACGGTCCTGGGTGTTTGGGGCTTTTGCGTTGCTGTGTCTAGTCTGCCTGACCTGGGCATTTGGCCTGTTTTTCTTGAACGACTCTTCAGCGATCATGGCCTACCTCTTCACGGTCTTCAACACCTTGCAAGGGAtgttcatcttcatcttccaCTGTCTTCTGCAGAAGAAGGTGCGTAAAGAGTACAGCAAGTGTTTGCGGCAGTCTCAGTGCTGCTCCGGTCTTCCTTCCGAAGGAGCTCACGGCGTTAACAAATCCTCGGCCTCCAGGTCCACCGCTCGATACTCATCTGCCACGCAGaGCCGTATCAGGAGGATGTGGAACGACACTGTGAGGAAACAGTCAGAGTCGTCCTTCATCTCCGGAGATATCAACAGCACTTCCACTCTAAACCAAGGAATGACGGGCAACTATCTGCTAACTAACCCTCTCCTCAGGCCTCACGACACTAACACCCGCTATAACAACCTTCTCGCCGAAACCATCGTCTGCAACACCCCTTCTCCTCCAGCTTTCCGCTCTCCAGGCCAGCACTCTCTCACCCACAGCCGTGATGTCAGCACCATGGACACGCTCCCACTTAACGACAACTTCAACAACAGCTACTCGCAGCGAGAGGACGACTACGAAGACCCGGCGCTGTGCTGCCCGCCCGGAGACGCTCTGCAGCTGGACGACGCCGCCTTCGAGAAGATGATCATCTCCGAGCTGGTCCACAACAACCTGAGGCCTCGCCGGCCGCCGCAGAACCAGTGCCGCTCCAAAAGCCCGGCGCCGTCCGACAGCAGGGGTCCGCAGGAGGCCTTCGACGGAGGTGTCGGGAACAGGAACCGGAGCGACGATGACGCCGACACCTCCGCTCTGCCTCCGTCCTCCAGCCACCCGGCTCTGGAGCTGCTCCTGCTCCACCCAAACGACCGGGAGGCCCTCGAGGCCCCGCTCCTGCCCCAACGAACTCACTCGCTCCTGTACAGCGCTCAGAAAGCCGCCGGTCCTCAGAAGGACAGCAGAAAAGCAGAAGGCGACGAGGACAAAGCGATAGCGCCCTCGCCGAGTAACAGGGACTCGTTGTACACAAGCATGCCCAACCTCAGAGACTCCGAGTCGGACCTCGGCGGCGGCCAGGACCACGCTTCTCCCTGCTCATCCGCCCAAAGCGAAACCGAGGAGCAGTGCTATAAGAGCTTGCCCGACCTGGGAGACGGGACTCAAGCGCTTTCCTACTATCAGATCAGCCGCCGAGGCACTAGCGAGGGCTGCATTGGCCCCGGGCCCCCCGAGGGCGACCCCGCTAGCGACGGACAGATGCAGTTAATCACCAGCCTCTGAGCCAAGAATGTTCGCTTCTCTTCGTTTTCTTCTTTCGGCCTCCCCCCCTCGTCCACAGACGACAGCGAGTCAACGGCGCAATGGATTGTTTAGCGGTGACCGAACGCCAGGCTCTCCTGTCGTACTGATCAAACTGAAAAGCTGGCGTCCCCTACGTCTGCCAAAAGCTTTGTACAgcattacaaaaaagtaaaaaataaacatgccaATGTCTGATTTTTGTAGGACTTCGAAAACTCTCCCAGCCAGTTCGCAGGTGGCTCttcccaaaatgaaaagaatgaatTCAAATCCCAGACTCAGGCCTTATATTTTCTCTATTGCACAAATAACTGTTGTACGAATGACGActaaagaaaatctattttgaAGTACCAGGTGTAAAGAGAGCCAGTTCAACCCGTAATCAACACTTGTGAATGATGTGCTATGGATTTTATCATGGAAGTTGTATTTTGCCAACGTAAATGTACAAAAAGGAGCTTCcttatttttttagcttaacGGAAGTTGTCTTGCACAAATTTGGAGTAAATTGGACTTgtaatttgttttactttaaaagaaaaaggaaaaaaaaagaaaaaaaaaactgctttgacTTTGTCAGGGATCAATAACATTCATACGTGTCAACACGATGTCTTAAGAACATATCTCAGTATTTGGcactaaataatttattatatgaagtatgaaataaaaaggGTTGGAGCGAAAGTGGGTGTGGTGTAACACTGTTGATATTCACTTCAGTCTTTTTTAAGACCCCATTGTCGTTGCAGATGTACATTCAACTCTTGTTTGATATTGAATAAAtgtgatgattttt

Function

GO: NA

KEGG:

id description
K04592 ADGRL1, LPHN1; adhesion G protein-coupled receptor L1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13901 lncRNA upstream 32717 4013106 ~ 4021316 (+) True G9302
TU13909 lncRNA upstream 34318 4019339 ~ 4019715 (+) True G9305
TU13906 lncRNA upstream 34749 4015450 ~ 4019284 (+) False G9304
TU13810 lncRNA upstream 137550 3886082 ~ 3916483 (+) True G9241
TU13796 lncRNA upstream 263694 3787000 ~ 3790339 (+) False LOC122355245
TU14012 lncRNA downstream 73804 4223591 ~ 4224111 (+) True G9362
TU14006 lncRNA downstream 110981 4260768 ~ 4266016 (+) True G9356
TU14036 lncRNA downstream 229789 4379576 ~ 4379832 (+) True G9379
TU14039 lncRNA downstream 237140 4386927 ~ 4387444 (+) True G9382
TU14052 lncRNA downstream 309306 4459093 ~ 4462067 (+) False G9391
XM_043260111.1 mRNA upstream 56307 3993391 ~ 3997726 (+) True tubb2
XM_043258723.1 mRNA upstream 62490 3951283 ~ 3991543 (+) True slc22a23
XM_043254140.1 mRNA upstream 178307 3813313 ~ 3875726 (+) True pth1r
XM_043253327.1 mRNA upstream 264400 3756171 ~ 3789633 (+) False LOC122355245
XM_043260728.1 mRNA downstream 10369 4160156 ~ 4171747 (+) True prkacbb
XM_043260737.1 mRNA downstream 10371 4160158 ~ 4171747 (+) False prkacbb
XM_043261966.1 mRNA downstream 29667 4179454 ~ 4207112 (+) False LOC122361024
XM_043261979.1 mRNA downstream 29667 4179454 ~ 4207112 (+) False LOC122361024
XM_043261988.1 mRNA downstream 29753 4179540 ~ 4217008 (+) True LOC122361024
TU13731 other upstream 375099 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 436990 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1314126 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1364406 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1417447 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 72452 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 414110 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 429487 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 748611 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 759342 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile