RNA id: XM_043217015.1


Basic Information

Item Value
RNA id XM_043217015.1
length 4417
RNA type mRNA
GC content 0.55
exon number 23
gene id LOC122323258
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4054024 ~ 4149787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGTGTTTGAACAGTTGTTGAGAGCAGAGCCTGGCGCGGGGTTTATGGCCCCTCGCGCGGGGCTGGGTTTGTAGGCCAGGTGCCGCTCCGCTCCGCTCCAGGCCGGGTTTTCCAGCGCGCCTCTGCAGTGAGACGCGCAGCCGGCTCGACGCGCAAAGCCGTCTCTCTGCTCCGGGATCGCGGCGCGCTTTCCGCAGCACCCGACGCCTGGAATTTGCTCAAGTTTTCGTCAAAAGCGCTTTTTCCCCCCTCGTCCGAGCGCGCGGCGGGGCGTTCAGAGGGAACCCGGTCGGGCCACCGCGGCGACGGAAGGGCGCGTGGCTCTGATTCGAACGCGCGTTCGTCGCGCTCTGCCCCGAACCGAGCGCTGCGTGGAGCGGGACGACTCCGGCTGCTGAAAACGGCGAAATGCTCCTTTTAAACGCGACCTGGGCGCTCGCTCGCCTCGCCTCTCCGTGTCCGTAGGCCTAATGCGGTTTGGTTCGTGGACCGCGCGGATCTGCGATCTACCTGAGCGCGCGATGAAAGTCTTTGTGCGCTGATTTAGAGGTGACTTAGAGAAGCCCTGGCTCTCGATTGCGTCGATACGTCTGCTGGGACTCGATCCACGGAGCATGAATGGTGAAGGGCGGAGAAGAGAGGATTGCTGATGTCAGCGTGGCCTGAATGCTGTCTACGTCTACTTTACTATCTCAACTATTGCCTGGCATCTGGAGACGCTCTTCAATAACCAAAATGGCTACTTCACTGTGGAAAAGTCCCCTGGTGCATGGACTTGTGTTAACTGTGATTTTTATACAATCTTCAGAAGCCTTCAGTCGTGCAGCGCTGCCGTTCGGTCTGGTGCGGAGGGAGCTGTCCTGCGAGGGTTACCCCATCGACCTGCGCTGCCCGGGGAGTGATGTCATCATGATCGAAACCGCCAACTACGGCCGCACAGACGACAAGATATGCGACGCCGACCCCTTCCAGATGGAGAACATTAATTGCTACCTCCCGGATGCCTATAAAATCGTATCTCAAAGGTGTAACAATCGGACACAGTGTGTCGTCATCACTGGCTCGGACATCTTCCCAGATCCCTGTCCTGGGACATACAAGTATCTTGAGGTCCAGTATGAATGTGTGCCATACAAAGTGGAGCAAAAAGTTTTTATTTGCCCTGGGACTCTGAAAGCAGTAGGAGACCCAGCCTTTGTCTTTGAGGCGGAACAGCAGTCTGGAGCTTGGTGCAAAGACCCCCTGCAGGCGGGGGACAAGATATACTTCATGCCATGGACTCCGTACCGCACCGACACGCTCATAGAGTACGCCTCGCTTGACGATTTACGAAGCGGCCGACAGACGACTAACTACAAACTTCCCCACCGAGTTGACGGAACCGGATTTGTGGCCTACGACGGGGCCATCTTCTTCAACAAGGAGCGCACAAGAAATATAGTCAAGTTTGACTTGAGGACTCGGATAAAGAGCGGGGAGACCATAGTCACCAATGCCAACTACCATGACACGTCGCCGTATCGCTGGGGCGGGAAAACGGACATCGATTTGGCGGTTGACGAGCGGGGACTGTGGGTTATCTACGCTACCGAACAGAATAACGGACGTATCGTTCTCAGCCAACTCAATCCCTATACTCTGCGCTTTGAGGCCACTTGGGAGACCGTCTACGACAAACGCTCCGCATCCAATGCCTTCATGGTGTGCGGTATTCTTCACGTGGTCCGTTCCACCTATGAGGAGAACGAAAGCGAGGCCAGTAAGAGCCAAATTGACTATGTGTATAACACCAAACTGGGGCAAGGGGAGTATGTCAATATCCTCTTCCCTAACCAGTATCAGTACATCGCAGCTGTGGATTACAACCCAAGGGACAACCAGCTATACGTGtggaataatttttacattctgCGATACAACCTGGAGTTTGGGCCGCCTGATCCAGATGAAGTCCCGACGGTCTCTGATTATATAACATCAACGCTGCAGCCCAGACGATCCACAGCTCCCATCAGGACCACGCCGATCAGCATCACCCAGAGACCGGCGCTCAACAGCAGCGTGACGCCGGACCCCGGGGCCGTGGACCGCCCCGGCCCGCCGCCGGACCCCAGCGCCGTCAGCCCGCCGCCCTCCAGCAGACGCTTCTGTGACGGGACGGAGCGGAGAGGCATCTCCTGGCCTCAGACGCACCGCGGAGCCACGGTGGAGCGGCCCTGTCCCAAAGGCACTCGAGGCATCGCTCTGTTCCTCTGCACGTCTGCCGATGGGATCTGGAGCCCCAAAGGTCCTGATCTCAGTAACTGCACGTCTCACTGGGTGACGCAGGTGGCGCAGAAGATCCGGAGCGGCGAGAACGCAGCGAACCTGGCGAACGAGCTGGCGAGGCACACGCAGGGCCCCGTGTACGCCGGGGACGTCAGCTCCTCGGTGCGCCTCATGGAGCAGCTGGTGGACATCCTGGACGCTCAGCTGCAGGAGCTCAAGCCCAACGATAAAGACACGGCCGGACGGAGCTTCAACAAGcgccaaaaaagagagaggactTGCAGGGCCTATATGAAGGCCATTGTGGACACGGTTGACAACCTCCTGAGGCCAGAAGCCCTTAAATCCTGGGAGGACATGAATTCCACAGAGCAAACACATGCCGCCACTATGTTACTCGATACCCTGGAGGAAGGAGCCTTTGTCCTCGCAGACAACCTGATCGAGCCCGCTGTCGTCAGAGTGCCTGCCGAGAACATCATGCTGGACGTGTACGTGTTGAGCACCGACGGCCAAATTCAGGACTTCAGGTTTCCGCAGACCAGCAAAAGAGGAGCCACAATTCAGCTCTCGGCGAACATGGTCAAGCTAAACAGTAAAAACGGTGTTGCCAAGTTGGTCTTTGTCCTCTATAAGCACTTGGGACATTTTCTCAGTACTGAGAACGCTACGGTGAGACTGATGGGAGAGGGCGGAGTCAGAAACCACACCCTCACTGTAAACTCCCACATCCTCTCCGCCTCCATCAACAAAGAGTCCAGCCGCGTGTTTGTGGCCGAACCGCTCATCTTCACTCTGGCACATTTGGATACTGAGAACTACTTCAATCCAAACTGCTCATTTTGGAACTATTCTGAGCGGAGCATGATGGGATACTGGTCAACGCAAGGATGCAAGCTCCTCGCCACGAACAAGACTCACACCACTTGCTCCTGCAGTCACCTGACCAACTTCGCAATCCTGATGGCCCATCGAGACGCACATGCGAGTATGGGAAGCGTTCACGAGCTCCTGCTGACAGTTATCACACGAATGGGCATCGCCATTTCACTTGTCTGCCTAGCCATTAGCATCTTCACCTTCTGCTTCTTCCGCGGCCTCCAGAGTGATCGCAACACCATCCACAAGAACCTCTGCATCAACCTCTTCATCGCAGAGCTCCTGTTTCTTGTGGGCATCAACATGACCGAACCTCCGATTGTGTGCTCTGTGATTGCTGGAGTTCTGCATTTCTTCTTTCTTGCCACCTTCGCCTGGATGTGTTTGGAGGCTGTTCAGTTGTTCCTCATGCTCGTGGAGGTCTTTGAGAGCGAATTCTCCAGACGAAAATACTACTACGCGTCTGGCTACCTGTTCCCCTGTGTGGTGGTTGGCATTTCGGCAGCCATTGACTATAAGAGCTATGGGACAAGGAAAGCCTGTTGGTTGAGGGttgaaaatcatttcatttggaGTTTCATTGGCCCAGTTACGTTCATCATTATGCTCAATCTCATCTTTCTGGTGGTGACTATGTACAAGATGGTGAAACACTCAATGTCTATGAAACCTGATTCCAGCCGACTGGAGAGCATACGGTCCTGGGTGTTTGGGGCTTTTGCGTTGCTGTGTCTAGTCTGCCTGACCTGGGCATTTGGCCTGTTTTTCTTGAACGACTCTTCAGCGATCATGGCCTACCTCTTCACGGTCTTCAACACCTTGCAAGGGAtgttcatcttcatcttccaCTGTCTTCTGCAGAAGAAGGTGCGTAAAGAGTACAGCAAGTGTTTGCGGCAGTCTCAGTGCTGCTCCGGTCTTCCTTCCGAAGGAGCTCACGGCGTTAACAAATCCTCGGCCTCCAGGTCCACCGCTCGATACTCATCTGCCACGCAGaGCCGTATCAGGAGGATGTGGAACGACACTGTGAGGAAACAGTCAGAGTCGTCCTTCATCTCCGGAGATATCAACAGCACTTCCACTCTAAACCAAGTTCTCAGGTCAGCTAGCCTGAGCAGACACACATGATGCCAGCACTCTCTCACCCACAGCCGTGATGTCAGCACCATGGACACGCTCCCACTTAACGACAACTTCAACAACAGCTACTCGCAGCGAGAGGACGACTACGAAGACCCGGCGCTGTGCTGCCCGCCCGGAGACGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13901 lncRNA upstream 32708 4013106 ~ 4021316 (+) True G9302
TU13909 lncRNA upstream 34309 4019339 ~ 4019715 (+) True G9305
TU13906 lncRNA upstream 34740 4015450 ~ 4019284 (+) False G9304
TU13810 lncRNA upstream 137541 3886082 ~ 3916483 (+) True G9241
TU13796 lncRNA upstream 263685 3787000 ~ 3790339 (+) False LOC122355245
TU14012 lncRNA downstream 75300 4223591 ~ 4224111 (+) True G9362
TU14006 lncRNA downstream 112477 4260768 ~ 4266016 (+) True G9356
TU14036 lncRNA downstream 231285 4379576 ~ 4379832 (+) True G9379
TU14039 lncRNA downstream 238636 4386927 ~ 4387444 (+) True G9382
TU14052 lncRNA downstream 310802 4459093 ~ 4462067 (+) False G9391
XM_043260111.1 mRNA upstream 56298 3993391 ~ 3997726 (+) True tubb2
XM_043258723.1 mRNA upstream 62481 3951283 ~ 3991543 (+) True slc22a23
XM_043254140.1 mRNA upstream 178298 3813313 ~ 3875726 (+) True pth1r
XM_043253319.1 mRNA upstream 264391 3756171 ~ 3789633 (+) False LOC122355245
XM_043260728.1 mRNA downstream 11865 4160156 ~ 4171747 (+) True prkacbb
XM_043260737.1 mRNA downstream 11867 4160158 ~ 4171747 (+) False prkacbb
XM_043261966.1 mRNA downstream 31163 4179454 ~ 4207112 (+) False LOC122361024
XM_043261979.1 mRNA downstream 31163 4179454 ~ 4207112 (+) False LOC122361024
XM_043261988.1 mRNA downstream 31249 4179540 ~ 4217008 (+) True LOC122361024
TU13731 other upstream 375090 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 436981 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1314117 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1364397 2675370 ~ 2689627 (+) False LOC122356587
TU13151 other upstream 1417438 2635241 ~ 2636586 (+) True G8768
TU14011 other downstream 73948 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 415606 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 430983 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 750107 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 760838 4909129 ~ 4909798 (+) False LOC122355892

Expression Profile