RNA id: XM_043217170.1


Basic Information

Item Value
RNA id XM_043217170.1
length 1533
RNA type mRNA
GC content 0.50
exon number 3
gene id dipk2aa
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1179945 ~ 1202987 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCAGACCGAACTTGTCTCGAGCTCGAGAAGACGAGCCTCGcgatttttatagaaataaagaaaaagcaatAGCAGCGCGCGCGCGGCGCATGGACAGCGCGGGGAGGCACGGACGCGCGCGGCGCGTTTCAAGAGAAGGGAGTTCGTAAATAGAAAACGGAAGCTTCCTCGAACGGACTGGAATAAACCGGGAATTTcgctcatttttttatttgAGTTTTCCCTCCGATGAGGGCTGGCCATTCGCCAAATACCTGGGGGCCTGCGGCCGGATGGTGGCGGTGAATTACGTGGGCGAGGAGCTCTGGAGCTTCTACAATGCACCCTGGGAGAAAAGAGTGGATCTGGCCAAGCAGCTGATGGACATCGCCGAGCAGCTGACCAACAACGACTTTGACTTTGCCCTTTACCTCTTAGACGTGAGCTTCGACAACTTTGCAGTCGGGCCTCGCGACGGAAAAGTCATCGTCGTCGATGCAGAGAACATCATAGTGGCGGACAAGAGACTGATTAAGCAGAATAAACCAGAGAGCTACGATGTGTGGTACGAGAGCCGCTACGAGGAGTGCGACAAAGAAGCCTGTCTCTCCTTCTCCAAAGACATCCTCTGCTCTCGGGTCACCGTGGACCACAACTACTACGCTGTCTGTCAGAACCTGCTCTCCAGATTCTCCACCTGGCGCGGCACCACGGGCGGCCTCCTCCACGACCCCCCTGCTGACGTGGTGAAAGACGGCCGCCTCACGGCCCTGCTGGACGAGTGCACCCGGCCCCAGAAACAGTACGGACGCTTCCAGGCAGCTAAAGAGCTGCGGGAGTTCCTGACGCAACTCACACAGCTGAGCAATACTAACAGGTAGTGTCCAGAGCAGGGGACGACCCCCTCAAAAAATAACTCTTAAGTACTTTTACAAATGTGCTACGGGATTCTGGAGCACATTCGTTCACCTTCAAGGGAGTCGCTATTTCGTTGCCGCTATCAATCATGCCAACATTGGCTCCAGTCCTGTCCGGGGGCTAATTAAAGAAGTTTGCACATGAACATGGATTAAAGGGTCGTGTGAAAATCAGCAGAATACAGGCTTGAACTGCTGGGATCACActggtgtgcgtgtgtgtgtgtgtgagagagttgaTTGTGATATCTGATGCTTCAGTGAATACCCTTGCTGCTATTACAGGTTCTGATCAGGATCCTGTAATACGGTTTctgattaatttataaattgGGTGCCGCAGGTGCACCGTGAGCAGGGGTTATAACTGAAGTGACACAGGGAGCTTTGTTTCTGTTTGGGTGAATCTTAACAAAAACATGTCCTGGtcatgttttcagccaaaagaaaaattatgaaaaaatatgtttttgatatGTTCCTGGTTTGGCCTGGAGTGTGTATaagtaatttgtttttcattttctctgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtacgtgtctgtgtctgtgtgtgtgtgtgtttttgttttgcgtttttctttggttttgtttttattccgttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12579 lncRNA downstream 134370 1046590 ~ 1046907 (-) True G8386
TU12578 lncRNA downstream 138327 1042745 ~ 1042950 (-) True G8385
TU12568 lncRNA downstream 181588 998819 ~ 999689 (-) False G8375
TU12565 lncRNA downstream 182116 998369 ~ 999161 (-) True G8375
TU12488 lncRNA downstream 404319 774259 ~ 776958 (-) True G8309
TU12635 lncRNA upstream 45196 1248176 ~ 1248590 (-) True G8415
TU12664 lncRNA upstream 106965 1309945 ~ 1310291 (-) True G8439
TU12668 lncRNA upstream 129865 1332845 ~ 1333104 (-) True G8443
TU12669 lncRNA upstream 132943 1335923 ~ 1337385 (-) False mfsd8l2
TU12713 lncRNA upstream 196428 1399408 ~ 1399728 (-) True G8479
XM_043257365.1 mRNA downstream 165891 1006589 ~ 1015386 (-) False fubp1
XM_043257340.1 mRNA downstream 165891 1006589 ~ 1015386 (-) False fubp1
XM_043257348.1 mRNA downstream 165891 1006589 ~ 1015386 (-) False fubp1
XM_043257330.1 mRNA downstream 165891 1006589 ~ 1015386 (-) True fubp1
XM_043257356.1 mRNA downstream 165892 1006589 ~ 1015385 (-) False fubp1
XM_043218097.1 mRNA upstream 42094 1245074 ~ 1247262 (-) True chst2a
XM_043256922.1 mRNA upstream 61664 1264644 ~ 1273155 (-) True pcolce2a
XM_043220642.1 mRNA upstream 128450 1331430 ~ 1337998 (-) True mfsd8l2
XM_043255836.1 mRNA upstream 142162 1345142 ~ 1347767 (-) True kcnmb2
XM_043255789.1 mRNA upstream 179597 1382577 ~ 1388864 (-) True eif4a2
TU12372 other downstream 957343 198628 ~ 223934 (-) False G8237
TU12376 other downstream 958132 214738 ~ 223145 (-) False G8237
TU12374 other downstream 1029647 142744 ~ 151630 (-) False G8237
XR_006247871.1 other upstream 180728 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 181110 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 181717 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 182117 1385097 ~ 1385166 (-) True LOC122328981
TU13282 other upstream 1236381 2439361 ~ 2441713 (-) False G8880

Expression Profile