RNA id: XR_006247003.1


Basic Information

Item Value
RNA id XR_006247003.1
length 3769
RNA type transcript
GC content 0.44
exon number 13
gene id mylk4a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4572945 ~ 4589827 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGATCCGTAACTGTCTTATCTGTGGATGAGTAAGCTGTTTTAGATGACTGGAGAGGGTGAATCAGTCAGAACACTGACACTGGCTCTAGTTTCAGTTGTGAAAGGGTCAAGAGGTTTCCACAGGCTCCTGTTTTCCTGTAGTAGCGTGCCATCATCTGCCATGCTGTTTATAAATCAGGAGAAACATaatcttgtttatatataaaaacagctcAATATTAGGTTGTTTTGTGTGGAGCCCCTAAAAAGGACGTGATGGtaaatccataaataaatacattaaaaaaagaagatggtGAGAAAGAATTTGTGATGCAGGCAATATGTGGTTAGAgagttttattcaaattaaatcttCTTTTCTTATTTCAGTGCTTTTGTGAACAAAAGAGAAGTTTGTCATagtatgcaaatgttttgcGAGAGAATGCAAAGTTTCTTTTGCAGTACTTTTGTTTGAGAATTGTAAAAACTTttgagaaagtgagagagagcagCATTTCTCGGATGAATGCAGTATTTCTTGGGGGAATGCAACATTGagagaattgtgaaatatattgagagatcataaatgttttgcaaaacaaatgcaatgttttttgtgAGAACACACGTTTTGTGtgagaataaaagtttttggttAAACGCAAGAGTTTTGTGAGTTTATCTGGGGAATGCAAtacttttgtgaaaaaaagtgatttgcTTAAGGGGGCAATGTTTTGTAGGAAAAGCTGCAGAGAGGATGCAAAGTTTCTTGAGGAAACATActactttgcaaaaaaaaaaaacctgcaaaagCACTTTTTCTCCTATCTCATATTTTTGTTCCATCACCCTCTgcatttttctttagtttttatattaattgatCTCTTCATATGGTCTTGATTTTTCCAATTCTTGGCTTCATTTTGTCTGAATTCAAGCCCTTGAAATTCCTTGTAAATTCCATCAATGTGAAATCTTAAAAAACATGACATCTCTGATCGAACCTCTCAAGGTGACAGAGAAGTCGGTGCTCAAATttctttccattcattttctaaGCAGCTCTTTCTGGAAACCGGGTGTCTCCAGGGCCCCTTTGACACCTGGTGGGGAGGCATCTGACATGGCTTTAGCACTCAAAGCTTCTCAGATATCACACAGCAATTCCTGAGCCAAACATAGCCCCTCCCCAGGACCTGCTGACGTAAAACCCCCCATACCAGTTACATTTACTGAGACCGGCTCATTCCATTCTTAGTGTGACCTCCACTTGGTAGAAGTTCATAGAGCAATCAATGGAGAGGATGAGATGGACGGATCAACTTGTTAATAGGGGATTTAAAATGTCTCATTTTTGTCCGGCTTCTGTCTCATATGAGTTTTCCACTTGGCTTATTGTTGGATTATCAGTGCCTTTTTGATCCAGCTACAGGTGAATCTCTGTTAGTTTGTCCACAAGTCTAGTTGGTTTTAGTCAAGACCATGAGTTCTTCTAACTCTAGCGCAGGTATTGACCTTCTCCAGGTCAGGATTGAGTCCTTGAGCAGCAAAATGGACAGGCTCATAAGCATCCAGGAAAAAGTGCTCAGCCGACTCGACGGCATGTCTCAGGACATTGACGGCATTGAGAAAGACGTTGAAACTCTGAAAGTGGAAAAGGAGGAGATCCATATTCCTCCGGTTATCCGTACAGGACCAGCCAATGAGATGAAGGAGATGTGTCAAGAAATGAACAGCATAATGTTGGCAGTAAATCAGCGCTCGGAGCAGCAAACCCAAAAATTGGAGGGGATGGAAAGACTGGTCATGAGCATTCAACAGGTGGTCAGTTTTATTGGAGAAACTGTGAAAACTTCCAAAATTATGGATATTATGTTCAAAGGGCCGGCATCTCGGAAGAACAAAGCAGCTTCGGCCCTCAGGTCCAAGGAGTGTAAAATCAAAGTGATCAGCAAGTGTCAGGCCTCAGATAACAATGAGCCTGCCACTATAAAGAGATGGAAGATACGGTGCCATTTTGAGGGTCTTCAAAAGCTACGAGATCACAAAGTCAAAGATGGGAAGTTTCGTCTGAGCCTTAAAGGCCTCAAagcacagaagaagaagaaaccaCCCGATTCAACAGATTCAGTATTTTTGAAGAAGCAGGCACTGTTGCTTGAAGAGGTTCAGAAACTAAATCAGGAGAATGCAGAACGCTCTGAAGCTTCCCAACATCTGGAGAAAAATGTGCAGGAATCAGAGGATGGCTTGGTTACTCCAATTCAGCAGGACCTTATCCTTGAGGAAGCCAAGCCACTTGAACCTGAACAGGagataagtttaaaaaaagaaaagaaggtaACTCTGGAGCTGAAAGAAGATGAGATGAAAGCCACAGAGCCAAAGATAGAGGAAGTCCAAGCTGAAACACCTAAATTAGTGGAGGAAGAGAGTAAGGAGCTGCCATTAGAGACTACAGACATACTGAAAGATCAGGAGGAAGAGGGTACGAAGGACCAGACGGTTACCAATGATCCTTCAGAACCTGACCTAACTGATACAGAGCCTGCTACGCCAACTGAGAACTCAGTGCAAAGCATTGAGTCCGAGCAGACGGATGAGGTGACCACCAGCAGCAAACGACGTGTGACACAAGAAGATCTGGGTTTGGAGGACCACAAGAAAAGCAGGGTTGAGGAGGGGAAAGAAAAGAGCGAGGAGGAGTCACAGGAACCTGAAGATCTTCGTGGCGTTTTCAAAGCCGATGGTGTGGAAATCGAGTTGGATTTCAGCAAACTAAAGAAAGAGAGCtatgaggatgaagatgaagatcaCAGTGATCACTTCTTCATTGATTGCACTCCACCTTCACCAGCACCCTTCAACCACCGCGTGGTGTCTGCCAAACCCAACCAGATTAACAACTTCTACACTATCAACCGGCAGGAGGTTCTCGGAGGGGGCCGATACGGTCAGGtgcataaatgcattgaaaattcCTCTGGACTCACTTTGGCTGCAAAGATAATCAAAGCTAGGAGTCAAAAAGAAAAGGAGGTGGTGAAGAATGAGATTCAGGTTATGAACCAGCTCGACCACGCTAACCTGATCCAGCTCTACGCCGCCTACGAGTCCAGGAACGACATCATCCTTGTACTTGAATaTGTTGATGGAGGTGAACTCTTCGACAGAATCATCGATGAGAACTATAAGCTGACGGAGCTCGACACGGTGATGTTCATCAGGCAGATCTGTGAAGGCTTGCGCTACATGCACAAGATGTACATCCTCCATCTGGACCTAAAGCCAGAGAACATTCTGTGTGTCAGCAGGCTCACAAATAAAGTCAAGATCATCGACTTCGGCCTCGCCAGGAAGTATCAGCCCAGGGAGAAGTTACGGGTGAACTTCGGGACGCCGGAGTTTCTCTCTCCTGAGGTGGTCAACTACGATTTCGTCTCGTTCAACACGGACATGTGGAGTTTGGGCGTCATCACCTACATGCTtaTCGGTTCATTCAACGTAAACCCGACACTGATTTGTCTGAACGGTGTTTTCCAGACTCAGTGGTTTGTCGCCCTTCCTCGGCGACGACGACAATGAGACACTAAACAACATTTTGGCCTGTCAGTGGAACTTCGAGGAGGATGAATTCTCCGAAGTCTCAGAGGAAGCCAAAGATTTCATTTCCAAACTGCTCGTGGTGGATAAAAGctggaGGATAGGAGCCACCGAAGCGCTGAAGCACCCCTGGCTGTCGGATCCAGCCGTTCACTTCCGCCTGCATCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14080 lncRNA upstream 9180 4568633 ~ 4570094 (+) True G9416
TU14059 lncRNA upstream 58629 4478309 ~ 4520645 (+) True G9397
TU14060 lncRNA upstream 96650 4479477 ~ 4482624 (+) True G9398
TU14051 lncRNA upstream 116432 4461116 ~ 4462842 (+) True G9391
TU14052 lncRNA upstream 117207 4459093 ~ 4462067 (+) False G9391
TU14214 lncRNA downstream 36284 4624762 ~ 4627170 (+) True G9516
TU14236 lncRNA downstream 65478 4653956 ~ 4654170 (+) True G9536
TU14252 lncRNA downstream 198568 4787046 ~ 4787369 (+) True G9550
TU14285 lncRNA downstream 324517 4912995 ~ 4913362 (+) True G9568
TU14327 lncRNA downstream 486371 5074849 ~ 5111570 (+) True G9596
XM_043264143.1 mRNA upstream 29671 4540052 ~ 4549603 (+) True si:ch211-241e1.3
XM_043218010.1 mRNA upstream 146555 4423377 ~ 4432719 (+) True LOC122323895
XM_043217998.1 mRNA upstream 157107 4415924 ~ 4422167 (+) True LOC122323886
XM_043217986.1 mRNA upstream 163474 4403781 ~ 4415800 (+) True LOC122323876
XM_043261503.1 mRNA upstream 202277 4305769 ~ 4376997 (+) False LOC122360677
XM_043223980.1 mRNA downstream 296132 4884610 ~ 4885965 (+) True LOC122328338
XM_043223961.1 mRNA downstream 299645 4888123 ~ 4891761 (+) True foxf2a
XM_043223968.1 mRNA downstream 299649 4888127 ~ 4891761 (+) False foxf2a
XM_043261999.1 mRNA downstream 309894 4898372 ~ 4899380 (+) True LOC122361055
XM_043254486.1 mRNA downstream 320655 4909133 ~ 4911176 (+) True LOC122355892
TU14081 other upstream 9180 4563897 ~ 4570094 (+) False G9416
TU14011 other upstream 356162 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 900340 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 962231 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1839367 2729636 ~ 2739907 (+) False kdsr
TU14280 other downstream 309920 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 320651 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 320658 4909136 ~ 4909798 (+) False LOC122355892
TU14373 other downstream 1019849 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 1235515 5823993 ~ 5826286 (+) False dusp28

Expression Profile