RNA id: XM_043218010.1


Basic Information

Item Value
RNA id XM_043218010.1
length 1979
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC122323895
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4423377 ~ 4432719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACGCACCtacagtctcacacacaggAACAGCAGGCAGGACGGAAAACAAGGTGACTCCTGCAGAAGCCGTTCAAGCAGAGCCGGATCAGTAAACAGTTTGGTGTCTATTGACACAGCTTTATCTGGGACCCCAGAGACATCATGTCAGGGGACGGTAGTCAGGGTGACAAAACCCAGTGCAATGGAGTCAAAAATCACAGGTCGGCTCTTCCCGCTGCAATGTTCTCACGAAACAATGTCAGCATGTGGAGCGTTCTCAAAAAATGCATTGGGATGGAACTTTCTAAAATCACAATGCCGGTGATTTTCAATGAGCCTTTGAGTTTTCTTCAGAGATTGACTGAATACATGGAGCACACGTACCTCATCCAGAAGGCCAGCGCTTCACAAGACTCCATCCACAGAATGAagTGTGTGGCAGCTTTCGCGGTGTCAGCTGTGGCCTCACAGTGGGAGAGGACGGGAAAACCCTTCAACCCTCTGCTCGGAGAAACCTACGAGCTGCTCAGAGAGGATCTGGGCTTCAGATGGGTCTCTGAGCAGGTCAGTCATCATCCGCCGGTCAGTGCCTTCCACGCCGAGGGCATAAAGAACAACTTCATGTTTCATGGCTCCATTTACCCAAAGCTCAAGTTCTGGGGAAAGTGTGTGGAGGCTGAACCGCGTGGAATCATCACCCTAGAGCTTCCTCTccACAACGAAGCCTACACCTGGACCAACCCGACCTGCTGTGTTCACAACATTATCATGGGACAACTGTGGATCGAGCAATATGGAAATGTCGAAATTATTAATCATAAAACTGGGGAAAGATGTTGTTTGACTTTCAAGCCGTGTGGCATCTTTGGAAAAGAGTTGCATAAAGTGGAAGGATACATTCTTGATAAAAGCAAAAAAAAGATCTGTGCTCTGTATGGCAAGTGGACGGAGTGTTTATATTCTGTGGACCCAGCGGCATTTGAAGCTCACAGGAAGTGTGACACGAAGCGCTCTGAGAAGGACAGGAAGGGAAGCACACAGAGTAATAGCGCGGACGAGGAGCCGGATGAAATGCCTCCTCCAGAGGCCGAGACGGTGCAGGTGATTCCAGGAAGTGAGCTGATCTGGAGGATATCACCACGACCTGACAACTCAGGGAAAtacTATGCGTTCACATCCTTCGCTCTGCAGCTGAATGAGCTGGATGGAGACATGCAACGAGCTCTTCCACAGACGGACTGTCGTCTGAGACCTGATATCAGAGCCCTGGAGAACGGACACATAGATGCAGCCAGTGCAGAGAAGAACAGACTGGAGGAGAAACAGCGAACAGCCCGGAAAAATCGCTCCAAATCAGACGAGGAATGGAAAATAAGGTGGTTTCATCAGGGGCCGAACCCTTACACCGGGGCCCCAGACTGGCTTTACAATGGAGGCTACTGGGACAGAAGCTACTCACACCTGCCTGACATATACTGACCTCAAACTACTGGAGACATCTGGGGAACGAAGCGTCCTGTGCTCTGGAAAAGCACGGGGAGCTTGCATTTCTATATTATtctataaatgtgtaaatgattGTCTGTTTTGGTGCTACGCCGTGATTATGATGACACAGTTGTGGTCGGCATTACATACAGAAAAAGCACGAGATCTAACCTGAGCTTTATCTTATAgtagtattaatttatataaagcaTACTCAAATATGATAATAGATGTGTGAGATGTGTGTAACGTCATACGTAATTTGTACAGTGTTGtgcaaaacatttgttacatttaaacatgaaacattGTAATTTTTATGGAAACTTGTCAACAATTAATAAGGATTAATTTCAAACTAGACTAGAAGTAGAACGATAGTGTTTTATTACACAGCTAGGATGATATaacatgaatattattattaatatgtgcaTTATACAGCTGCACCTTGAAAAATGCATGTTGTCACATAAACACTATTTTTGCCACATGACGTTTTTAAtgttg

Function

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14039 lncRNA upstream 35933 4386927 ~ 4387444 (+) True G9382
TU14036 lncRNA upstream 43545 4379576 ~ 4379832 (+) True G9379
TU14006 lncRNA upstream 157361 4260768 ~ 4266016 (+) True G9356
TU14012 lncRNA upstream 199266 4223591 ~ 4224111 (+) True G9362
TU13909 lncRNA upstream 403662 4019339 ~ 4019715 (+) True G9305
TU14052 lncRNA downstream 26374 4459093 ~ 4462067 (+) False G9391
TU14051 lncRNA downstream 28397 4461116 ~ 4462842 (+) True G9391
TU14059 lncRNA downstream 45590 4478309 ~ 4520645 (+) True G9397
TU14060 lncRNA downstream 46758 4479477 ~ 4482624 (+) True G9398
TU14080 lncRNA downstream 135914 4568633 ~ 4570094 (+) True G9416
XM_043217998.1 mRNA upstream 1210 4415924 ~ 4422167 (+) True LOC122323886
XM_043217986.1 mRNA upstream 7577 4403781 ~ 4415800 (+) True LOC122323876
XM_043261508.1 mRNA upstream 46380 4305601 ~ 4376997 (+) False LOC122360677
XM_043264143.1 mRNA downstream 107333 4540052 ~ 4549603 (+) True si:ch211-241e1.3
XM_043217242.1 mRNA downstream 140226 4572945 ~ 4589827 (+) False mylk4a
XM_043217223.1 mRNA downstream 147766 4580485 ~ 4589827 (+) False mylk4a
XM_043217230.1 mRNA downstream 147768 4580487 ~ 4589827 (+) False mylk4a
XM_043223980.1 mRNA downstream 451891 4884610 ~ 4885965 (+) True LOC122328338
TU14011 other upstream 200265 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 744443 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 806334 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1683470 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1733750 2675370 ~ 2689627 (+) False LOC122356587
TU14081 other downstream 131178 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 146555 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 465679 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 476410 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 476417 4909136 ~ 4909798 (+) False LOC122355892

Expression Profile