RNA id: XM_043218071.1


Basic Information

Item Value
RNA id XM_043218071.1
length 2497
RNA type mRNA
GC content 0.46
exon number 16
gene id pls1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1248218 ~ 1263078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttctgttcttcTCTCGTGGCGCTGTCCTCACCAGTactacattcattcattcagcatGAGCAGTGTgtgattttaatgtgatttcCAGATACAtctgagtattttttttttagctgtttagATCTGCATTAGAAGAAAAACATGGCACTAATCACAAGAGGACTCCACAGGGTATTCATCTGGACCAAGAGAccaaataacacatttacagGTCTTTTGCATGGTGAGAACTGCTGCAGGGAGAAAAGCATGGAGAGCAAAGTGACGCAGATCTCCCGAGAAGATCTGGAGGACCTGAGAGAGGCTTTCAACAAAATCGATATCGATAACAGTGGCTATGTGAGCGATTTTGAACTTCAAGAGCTCTTTCGAGAGGCCAGCTTTCACATTCCGGGATACAAGGTACGAGAGATTGTGGAAAAGTTCATGGCAGGTGACACCAACAAAGACGAGAAGATCAGTTTTGAAGAGTTCGTTGCGATATACCAAGAAATGAGAAGCAAAGAGGTGAGAGAAACTTTCCGCAAGTGCATCTCCAGGAGGGATGGGATTCGTTCGTTTGGAGGAACATCAAAGATCTCAAGTGAAGGAACTCAGCATTCTTACTCAGACGAAGAAAAAGTGGCCTTCGTGAACTGGGTCAATAAGGCTTTGGCGGAAGATCCCGACTGCAAGCATCTGATCCCGATGGACCCAGAGACTGACAGCTTATTCAAATCTGTGAAAGACGGAATATTGCTGTGCAAAATGATCAACCTCTCGCAGCCGGACACCATTGATGAGCGGGTCATCAACACGAAGAAATGCACTCCATTTACAATGACGGAGAATTTGGTGCTGGCTCTAAACTCTGCATCGGCTATCGGATGCACGGTGGTCAACATCGATGCTCAGGACATGAAAGCAGGAACCCCTCACCTCGTGCTTGGCCTCCTCTGGCAAATCATAAAAATCGGCCTCTTCGCTGACATTGAAATTTCACGCAACGAAGCTCTAATTGCTTTGCTGGATGAGTCAGAGGAGCTCGACCACCTGATGTCTATGTCCCCCGAGGACCTTTTGCTGCGATGGGTCAACTATCACCTCAAAGCCGCCGGCTGGGAACCAATCAGAAATTTCAGTGATGATATTAAGGACTCCAGGGCATATTTCCACCTGCTTAATCAGATCTCGCCTAAAGGAGACGGGGATGACGAGATGAGGATCGACATTGACATGTCTGGTTTCAATGAGAGTGATGATGAAAGGCGAGCAGAGCTGATGCTGAAGCAGGCAGATCGTCTGGACTGCAGACAGTTTGTCACTCCCAAAGACGTGGTGGCAGGAAACCAGAAGCTCAACATGGCCTTTGTAGCCAATCTTTTCAACATGTACCCGGCCTTGAACAGACCCGCCAGTAATGGCATTGATTATGCAATTGAGGGGGAAACGAGAGAGGACAGGACGTTCAGAAACTGGATGAATTCTCTGGGAGTTACTCCACATGTCAACCACCTGTACAGCGATCTGCACGACGGTCTCATCATTCTTCAGCTGTATGAGAGAACCCAGGTTCATGTTGACTGGACTAGAGTCAATAAACCTCCCTATCCAGTACTGGGATCCAACATGAAGAAGcTTGAGAATTGTAATTATGCGGTCGCACTGGGCAAAAAGGAAGCAAAGTTTTCCTTAGTAGGAATCGGTGGTGAGAATATCAATGAAGGAAGCTCCATGCACACTCTTGCATTGGTCTGGCAGCTAATGAGAAgGTACACACTAAAGGTTCTGTCTGACATCGGTGACGGGGAAAAAGTCAGTGACCAAGTAATTATCGACTGGGTTAACAACACCTTGAAACAAGGCCAGAAAGACTCGCATATTAACAGCTTCAAGGACAAATCAATCAGTACTAGCCTTCCGGTGATTGATCTGATCGACACCATCATGCCCAAAGCCATCAAATACGAGATGGTGAAGACCGGCGATCTGACGGCAGAGGACAAGCTAAACAATGCAAAATATGCGATCTCAGTGGCGCGTAAAATCGGAGTCAGGGTGTACGCCCTGCCCGATGACCTTGTGGAGGTCAACCCCAAGATGGTGATGACGGTGTTTGCATGCCTTATGGGGAGAAGCTTGAAGAAAGTAGATGGCTGACCTTTCTTGAAGGACGCCGTCAGAAAGCACAACCCTCACTTTGCACTTTTTCTTCTCTCGACTTCCCTTCTGCCTCATTCACCAATACTTTCAcgcattagtttttttttttaaacatttctttacgGATACTtcatctttgattaatagacCTCCTGTTAATTACGTTTCACTAATCGTTTCATTTCTCCCAGCTCATGCGCTACAAGTAGATTATTAAAAGTTGACGTTattttcttaaaggaacagtttacccaaaaatgaaagcgtGCGTTGCGTcactgcggtgaatgggtgccgtcagaatgagagtcctgACAGCTAATCCAGgcgaaaagctgcatgtttctaagaaac

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12596 lncRNA upstream 45204 1197427 ~ 1203014 (+) True G8393
TU12606 lncRNA upstream 62186 1180130 ~ 1186032 (+) True G8394
TU12330 lncRNA upstream 465473 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 564025 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 576655 668304 ~ 671563 (+) True G8173
TU12676 lncRNA downstream 119041 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 120814 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 143910 1406988 ~ 1408710 (+) False ccdc39
TU12699 lncRNA downstream 144573 1407651 ~ 1416464 (+) False G8469
TU12698 lncRNA downstream 152248 1415326 ~ 1425295 (+) True G8469
XM_043224735.1 mRNA upstream 180776 1062189 ~ 1067442 (+) False si:ch211-71m22.1
XM_043224725.1 mRNA upstream 180776 1062736 ~ 1067442 (+) True si:ch211-71m22.1
XM_043256987.1 mRNA upstream 186944 1052080 ~ 1061274 (+) True LOC122357578
XM_043219803.1 mRNA upstream 208614 1035675 ~ 1039604 (+) True LOC122324991
XM_043256214.1 mRNA upstream 215229 1027293 ~ 1032989 (+) True LOC122357034
XM_043219083.1 mRNA downstream 16759 1279837 ~ 1308819 (+) True ephb3a
XM_043219092.1 mRNA downstream 16759 1279837 ~ 1308819 (+) False ephb3a
XM_043221538.1 mRNA downstream 77665 1340743 ~ 1345013 (+) True kcnmb3
XM_043255777.1 mRNA downstream 93162 1356240 ~ 1371916 (+) True tbl1xr1b
XM_043255802.1 mRNA downstream 111980 1375058 ~ 1381470 (+) False b3gnt5b
TU12491 other upstream 420009 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 798199 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 798199 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1025175 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 281695 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 915688 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 915688 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1007603 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1135876 2398954 ~ 2401745 (+) True G8725

Expression Profile