RNA id: XM_043218229.1


Basic Information

Item Value
RNA id XM_043218229.1
length 1916
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC122324044
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3310936 ~ 3312851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAATTAAAAACAGAGCAGAGTGCAGCCAAGAGAACGCCAAAGAGGAAGATGGGCAGCCTCCTCCAGATCCTGCTGGCTCTATTCGTCTCTGTTATAGGTGCCCTCTACCTTCTGGGGTCTTTTCGGCGCAGACGAGCTGGAGAACCCCCTCTAGATAAGGGCCCTATTCCCTGGTTTGGCCATGTGCTGGAATTCAGGAAAGATACGGCCAAATTCCTGCAGAGAATGAAGGAAAAACACGGAGATATATTCACAGTCCAGCTGGGAggcttttatttccattttatcaCAGACCCACTTTCTTTTGGCTCTGTGGTCAAAGAGGCCAGAACCAAGTTGGACTTCAGTAAATTTGCAGAACAGCTGGTTTCCAGAGTATTTGGCTATCATTCCATTGAAAGCGAACACAAGGTTCTCCAAACATCAAGTACCAAGCATCTCATGGGAGATGGTCTGGTCGTCATGACTCAGGCCATGATGTACAATCTTCAGAATCTGATGCTCCATAGCGTTGGATCAGAAGATGACAAGCAATGGCAAGAAACCGGACTTTTTACGTACAGCTATAATATTGTCTTTCGCGCAGGCTATTTGGCTCTGTTCGGGAATGAGTCGGTCAAAAGCATGGGATCTTTGGATAAGGCGAAGGAAATCGACCGGATACATTCGGACAAGCTTTTCAAAGAATTCAGAAAATACGACCAGCTATTTCCGAATCTGGCTTATGGTGTGCTGGGACCCAGTGAGAAGATGGAGGCAGAGCGTTTGAAAAGGCTGTTCTGGAGCACGCTTTCAGTGCAGAAGATGAGATCCAGAGACAACATCAGCGGCTGGGTGAGCGACCAGCAACAGGAGAGAGACGAGAAGGGCATGCAGGAGTTCATGCAGGACCGATACATGTTTCTGCTTCTGTGGGCGTCTCAAGGAAACACGGGTCCTGCAGCATTCTGGCTGCTCCTGTACCTGATGAAGCACCCCGATGCAATGAATGCCGTCAAGAAAGAAGTTGAGGAGATTCTCAGAGAAACGGGGCAGGAGGTAAAACGAGGCGGGCCGCTGATTGATCTCACTAGAGATATGCTCCTCAAAACACTGGTCCTAGACAGTGCAGTCGAGGAGACCCTCCGTCTGACAGCCGCCCCGGTCCTTACCAGAGCTGTTTTGCAGGATATGACCATCAATATGGCCAGCGGACAAGAATACAAGATCCGCAAGGACGACAGAGTGGCCATTTTCCCTTACATAGCCGTTCAGGTGGACCCAGAAGTTTACCCGGATCCCTACACCTTCAAGTACGACCGCTTCCTCACGCCGGATGGAAGCAAAAAGACTGATTTCTACAAAGGTGGGAAGAAACTCAAGTACTACAACATGCCTTGGGGAGCAGGAACAACTATGTGCCCTGGGAGATTCTTCGCCACAAATGAGCTGAAGCAGTTTGTCTTTCTCATGCTGTCCTACTTTGACTTTGAGCTGAAAAATTCCAATGAAGAGATTCCAGGTATTGATATCAGACGATGGGGGTTTGGCTCCATGCAACCAACTAAAGACATCCAGTTTAGATACAGACtcagattttaaaaaggtttcattttaatagtaCACTGAAGCTTCAACAATATTCCTTAATGAAAGCAGGCTTTAAAACTGACATCTGGGTTCTAAATTATCCttaagtattgtttttttttttgcttatctCACAACCAGTTTGATCTGTGTTGCCCAAAGACTGCATCAGCAAGAAAAACAGAGGTCATACAGCATACATAGGAACaagatatttataaaacagGTAATTTTGTGCATAACAAAGATCAAAAAGATCAACATATTGTGCTGATTTCTTATGTGCtattttatagaaaaacaaGATATATGAggtatatatcaaataaatatattaatctctc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07431 CYP8B1; sterol 12-alpha-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13515 lncRNA upstream 146113 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 189883 3116848 ~ 3121053 (+) True G9022
TU13209 lncRNA upstream 398149 2912291 ~ 2912787 (+) True G8816
TU13185 lncRNA upstream 449830 2819072 ~ 2861106 (+) True G8794
TU13184 lncRNA upstream 454527 2819072 ~ 2856409 (+) False G8794
TU13665 lncRNA downstream 210419 3523270 ~ 3524571 (+) True G9130
TU13692 lncRNA downstream 250857 3563708 ~ 3564239 (+) True G9141
TU13693 lncRNA downstream 259586 3572437 ~ 3573075 (+) True G9142
TU13801 lncRNA downstream 467689 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 471488 3784339 ~ 3784667 (+) True G9234
XM_043253569.1 mRNA upstream 2638 3306262 ~ 3308298 (+) True LOC122355375
XM_043217297.1 mRNA upstream 57812 3235234 ~ 3253124 (+) True abhd3
XM_043263882.1 mRNA upstream 97270 3209152 ~ 3213666 (+) True LOC122362414
XM_043254309.1 mRNA upstream 113489 3194012 ~ 3197447 (+) True LOC122355741
XM_043254300.1 mRNA upstream 120348 3170451 ~ 3190588 (+) True kcnt2
XM_043218239.1 mRNA downstream 150 3313001 ~ 3333005 (+) True gjc2
XM_043218248.1 mRNA downstream 13340 3326191 ~ 3333005 (+) False gjc2
XM_043263695.1 mRNA downstream 23548 3336399 ~ 3339974 (+) True iba57
XM_043263682.1 mRNA downstream 30807 3343658 ~ 3351584 (+) True snap47
XM_043254097.1 mRNA downstream 147876 3460727 ~ 3481179 (+) True wnt3a
XR_006252450.1 other upstream 571029 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 621309 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 674350 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 674350 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 692487 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 302631 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 363574 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 909388 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1251046 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1266423 4579274 ~ 4588478 (+) True mylk4a

Expression Profile