RNA id: XM_043219092.1


Basic Information

Item Value
RNA id XM_043219092.1
length 4252
RNA type mRNA
GC content 0.52
exon number 16
gene id ephb3a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1279837 ~ 1308819 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTATATGCAATAAAAGAGTTACACGTCGATTTAGAGCATCTCcgaaacaaataatgaaatgcataaataaaagaacGCGGGGGAGCACTTGGTCTGTAAGTTATCAGCGGTATCCCGCTGGGTTTTGCCTTGGGACCGATAGAGCTTTCGCCCCCCCATCCTTTCTCGCGACTGACACTCCTCCGTGCAGTCGCAGAGAATCAACAGCTTCTTTCACACTGAGGATGAGGATGGTGCCACACATGTAGAAGAGCATGATAGATCCGTGGATTCCGTAGAGCGAACAGTTGTGAATGAAAGACGCGAAGGCAACCGTAGCGAGAGGAGCCAGACTCTTATGGACAGCAGGTGGGCTACTACAGAGCTGGCGTGGACCACCTATCCAGAAAGCGGGTGGGAGGAAGTAAGTGGATATGATGACCACTTGAGCCCCATCAGGACATACCAGGTCTGTAATGTACTGGAGCCCAATCAGAACAACTGGCTCCGGACAGACTTCATCCCTCGTCGAGGAGTCCTTCGAGTCTACGTGGAGCTCAAGTTCTCAGTGCGGGACTGTGGCAGTATTCCCAATATTCCGGGGTCCTGCAAGGAGACCTTTAATCTGTTCTACTATGAATCAGATGGAGACATGGCCACAGCAAGCAGCCCGCCATGGAGGGAGAACCCCTACGTAAAGGTGGACACCATAGCCCCTGACGAGAGCTTCTCATTGCTGGAGTCCGGAATCGTAAACACCAAAGTACGAAGCTTTGGTCCCCTTTCCAAAGCTGGTTTCTACCTGGCCTTCCAGGACCTGGGCGCCTGCATGTCCCTCATCTCGGCCagggttttctttaaaaagtgctCCACCACAATTGCCAACTTCGCTGTCTTCCCCGAGACGGCCACCGGTGCCGAGGCCACCTCTCTGGTCATCGCCGCCGGAGCCTGTGTGCCAAACGCCATAGAGGAATCGGTCCCTCTAAAGCTGTACTGCAACGGAGATGGAGAATGGATGGTTCCCGTGGGAGCGTGCACCTGCATGCCGGGCTTTGAGCCGGCCAAGAAAGATACTCAGTGCCAGGCGTGCACCCCAGGGACCTTCAAATCCAAACAGGGAGAGGGTTCTTGTATGCCGTGCCCTTCCAACAGCCGGGCCAGCTCTAGGGCGTCCAGCATTTGCCCTTGTCAAAGCGGCTACTACCGTGCTGACAGCGACCCCCCTGACGCGGCCTGCACTACTGTTCCCTCGGCTCCCTTAAATGTGATCTCCAGCGTGAACGAGACTTCGGTGTCGCTGGAGTGGTCCGAGCCGCGGGACTTGGGCGGGAGAGGTGACGTGGTGTATAACGTGGTGTGTAAGAAGTGCCTGCACGACGGCGGGTCCTGTGCGCGCTGCGATGATAACGTGGAGGTGTCTCCGAGGCGGCTGGGTCTGGCCGAGAGGCAGGCGGCGGTGAGGAACCTGCAAGCTCACACCCATTACAGCTTTGAGATTCAGGCTGTCAACGGAGTGTCCCCCAAGAGCCCATCCACCCCGCAATATGCCACTGTCAATATCACCACCAATCAAGCAGCTCCATCAGCGGTCCCCACCGTCCACTTAATGCGGGCCACAGCTGGCACTCTCAGCCTCTCCTGGCTGCCCCCAGAGCGGCCCAATGGCGTGATCCTGGATTATGAGATCAAGTACCAGGAGAGGGGAGAGTCGTTCTCGCATACCGTCACTGCACAGCACACTTCTGCCAAAGTGGAGGGTTTAAAAGCTGGCACGGTATACGTCGTGCAGGTACGTGCTCGGACAGTAGCCGGTTACGGACGCTATAGCAGCCCTGTGGACTTCAGTACAAGTCTGTATGATGACCCAGAGCGTTCAGTGCAGGACCTGTTGCCGCTCATTGTGGGCTCTGCCTCGGCTGGATTTGTGGTCATCCTCGCCATGGTGGTCATCGCCATTGTCTGCCTTAAACGGCAGCGTACTGGCTCTGAGCTGGAGTACACTGAAAAACTGCAGCAGTACGTATCCCCCGGTGTAAAAGTTTATATTGACCCTTTTACATATGAAGACCCGAACGAGGCCGTTCATGAGTTTGCCCGAGAGATCGACATCTCATGTGTGAAGATAGAGGAAGTCATTGGAGCAGGAGAGTTCGGGGAGGTGTGTCGAGGCCGACTCAAGCAGCCTGGCCGAAAGGAAATGACCGTGGCCATTAAGACGCTCAAGGCAGGCTACACCGAGCGCCAGAGACGAGACTTCCTTAGCGAGGCCAGCATTATGGGGCAGTTTGACCATCCCAATGTCATCCACTTGGAGGGCGTTCTGACCAGAAGTTGCCCGGTGCTCATTGTTACGGAGTTCATGGAGAACGGAGCGCTCGACTCTTTCCTAAGACTGAACGACGGCAGGTTTACGGTAACGCAGCTGGTTGGCATGTTGAGGGGGATCGCAGCTGGCATGAAGTACCTGTCTGACATGAATTACGTCCACCGCGACCTGGCCGCCCGCAACGTGCTCGTCAACAGCAACCTAGTGTGCAAAGTGTCCGATTTCGGCCTTTCTCGCTTCCTGGATGATAACTCGTCGGACCCCACCTACACGAGCTCATTGGGGGGAAAGATCCCAATCCGCTGGACCGCCCCCGAGGCCATCGCCTTCAGAAAGTTCACCTCTGCGAGTGATGTGTGGAGCTACGGGATTGTGATGTGGGAGGTTATGTCATTCGGGGAGCGGCCATACTGGGACATGAGCAATCAAGATGTAATGAACGCAGTGGAGCAGGACTACAGGCTGCCTCCTCCCATGGACTGCCCCGCAGTGCTGCACCAGCTCATGCTGGAGTGCTGGGTGAAGGAGCGGAACATGAGGCCGCGCTTCGGACAGATCGTCAGCACACTTGACAAGCTCCTCCGCAACGCCGCGAGCCTCAAAGTGCTTACCAGCACACACTCAGGTGATCTCTGTCGAGTTGGCGGGACCCTGCCGGGCCATCAGAGGAAGAGTATAGGAGATGCACAAGACATGAAACAACAAATGAGCCAAACTCTGCCCATACGGGTTTGACTGATTAAAAAGAACACCTGCTGAGCCTCCAGGCTAGCAACAAATTCCCATTTGAAGAGTAAACCTGACTGGGACAATCCATAAAAAGCCAATGGAAAATTACTGGAGCCGACTATTGCTTGAAGAGCCAATGGAAAACCTGTATACAATTTGGGACAGTGTCGCACCCCTCCCGAGGAGCCTGTGGAAAACTACGGCGTGTCCAATGGAAAACTGTATGGGCCTGACGGGCAGCCTGTCTATGGGGCACCTGGGGAGTGCTGGGAAAACACAGCACATGTTAATTGGAATTCTGTGCGATGGCGCCTCAGGCAATCGTCTTTGTTCTTTCCCTCCCTTTTGCCATGACTTTCTCGTGTTTACACTGAATTTTCATTACATGGATTAAATTGACGACGTTTCTACTTCTCAGGTTCAGTttgcatgtgtgcatgtgtttctCTAATGGCAAAAAGCGATCACTCTCTTCCGTGACTCCAATCCCTTCCATTCTTCCTCTCATTTGCCGAGGCCACAAACGATGAGACGGACTCGAGAATTATAAGCTaactgtaataatgttttaaaaatgtattaaatgtaagcCTGGGCTGTTTGATGTTGGCTTGAGGACAATTTGCCGCTCTTTTTCCCCTCAAAGACTTGCTTCTTCTGATCTTTTCTTCATATTGAAGAAAGGAAGAGAGGAGTGGAACACAGGAAAGTTATAAACTAGCCAGGACGGACTCAAACTAAAACTTTTTCAGAATGAGAAGAGGACATTTTCAATGAATGGAAAGTCCTTTAAGGGCGagttgactttaaaaaaaagcggACTGTTACGATTCaaggaaaaatgttttatttacctcTGTTGTATTTTGTCTTCCATGAAACGCTCTTGAGAGATTTCTCCACGCGGAGGACTTCGGACTACGATTTAAAAACTCCCGTTTCCCCTGCCTGTGAGCGAGCGGGAATTGTGCTctatgtgtgtatgcgtgtgtgtgtatgtgtgtgtgtgtacagtatgctCATGTGTGCTTGAGAGAGCCAGTCGAGCTCTACAGCTTTACATGCATGCCATATTCAAAACTCAAACCTATCCGAGAGGTGAGGCGACGACAGTTTGACTCGAGAGCTGTTGTTTGATGAATATTCcacttattttaattcagtctgTTCAAATATGCATAACTGTGTAAATAAATGCCTCATAAGAACTGAA

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0016477 cell migration biological_process
GO:0060997 dendritic spine morphogenesis biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12596 lncRNA upstream 76823 1197427 ~ 1203014 (+) True G8393
TU12606 lncRNA upstream 93805 1180130 ~ 1186032 (+) True G8394
TU12330 lncRNA upstream 497092 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 595644 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 608274 668304 ~ 671563 (+) True G8173
TU12676 lncRNA downstream 73300 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 75073 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 98169 1406988 ~ 1408710 (+) False ccdc39
TU12699 lncRNA downstream 98832 1407651 ~ 1416464 (+) False G8469
TU12698 lncRNA downstream 106507 1415326 ~ 1425295 (+) True G8469
XM_043218071.1 mRNA upstream 16759 1248218 ~ 1263078 (+) False pls1
XM_043218085.1 mRNA upstream 16759 1249030 ~ 1263078 (+) False pls1
XM_043218080.1 mRNA upstream 16759 1249591 ~ 1263078 (+) True pls1
XM_043224735.1 mRNA upstream 212395 1062189 ~ 1067442 (+) False si:ch211-71m22.1
XM_043221538.1 mRNA downstream 31924 1340743 ~ 1345013 (+) True kcnmb3
XM_043255777.1 mRNA downstream 47421 1356240 ~ 1371916 (+) True tbl1xr1b
XM_043255802.1 mRNA downstream 66239 1375058 ~ 1381470 (+) False b3gnt5b
XM_043255813.1 mRNA downstream 66241 1375060 ~ 1381470 (+) False b3gnt5b
XM_043255810.1 mRNA downstream 66241 1375060 ~ 1381327 (+) True b3gnt5b
TU12491 other upstream 451628 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 829818 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 829818 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 1056794 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 235954 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 869947 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 869947 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 961862 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1090135 2398954 ~ 2401745 (+) True G8725

Expression Profile