RNA id: XM_043219558.1


Basic Information

Item Value
RNA id XM_043219558.1
length 1176
RNA type mRNA
GC content 0.43
exon number 7
gene id crfb16
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6235870 ~ 6239694 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCAGACATCACAAAGACACCTACAGTCATTGATATTAAGACTCTTTCGTTTCACATCAACATGATTAGCAGgggttgttttatttgaaaaaggaGAGTGGAAAACCTCTGGACTATTTTGGTTTTTGCCAAAGGAAGGGGAGTCCAGGGCTTGACCAGGGCTGGTGTTTACAAAGACAGGAGAAGAAGAGGTTATGTGCAGTGGTTTGATTAAGACTCTGTTATCTCTGCTTCTGTACTTTACCATTAACTATTCAAGTTCACTATCCACAACTCTGAATGTCTCAATGCATTCTGTAAACATGATGCACATCCTGAAATGGAGCCTCTTGCAAGCACCCTGTTCCAATGTCAACTATTCTGTACAATTTCAAGGGGAGTATGAGTTATACAATCTTAATGGAACATGGGTAGATGCTTTTGACTGCCAAGAGATCAGTGAAAACAGGTGTGACCTCACCCATGACTTGGCCTCCAACTCTGACTACAGTATTCGCATAAAAACGAACTGTGATGGCCAGAAATCATGGACACAACTACCAGCGACCTTCAACAGAAGAGAGAcAGTGTTACTGGTTCCAAAAATGATGATGAATGTGGATGGGGATCCTATCCAGGTGGATTTCAACACAACTCTTCATGATCTGAATGTAATGCTTAAAGTCTGGAAGGAGGGGGCAGAACTGAATGCCTCCATTCATGTGATCAGAGCTTATCCATACCATTTTTCCATTGCTGCCCATCGAGGGAAAGAGAAGATGTGCTTCAAGGCAGAAGCACTATTAGAAGCCATTAACAAGAGCTGCAGCATTGACACACAATGTGTCATCATACCTAAGCAGACATCTGACTATATGAAGCTGGTGATGGTGAGCATCGCTGTAGCTATAGCAGTTACCGTGGCTTTTATTCTGGGATGGCTGTCTACACATCTTGGTCCACAGATCAAACAAATCATTTGCCACCAGGAGAACATTCCCAATGTGCTGCTTGATGACTGGACCACCAGAACACCCATCCTTTGTACTGATGTTTCACTGGAGCCCATAGATCCACTTTTGCTACTCCTCTCAGCAGAGCATCAGTGCACAACGGTGCAGTTTGGAGGGAACAAGTTAGACCAATGAGTTGGACTGCAGGACATAAgctaaccaaaacaaaacaaaaaaatgac

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K05137 IL20RB; interleukin 20 receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14477 lncRNA upstream 93005 6142042 ~ 6142865 (+) True G9697
TU14472 lncRNA upstream 375918 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 403180 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 404755 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 510854 5724701 ~ 5725016 (+) True G9671
TU14570 lncRNA downstream 136449 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 262696 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 272470 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 283111 6522805 ~ 6523467 (+) True G9834
TU14676 lncRNA downstream 284426 6524120 ~ 6524421 (+) True G9836
XM_043262112.1 mRNA upstream 397237 5836648 ~ 5838633 (+) True LOC122361161
XM_043223481.1 mRNA upstream 409620 5824152 ~ 5826250 (+) False dusp28
XM_043255183.1 mRNA downstream 9354 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 17857 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 36322 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA downstream 46228 6285922 ~ 6337572 (+) True fgf12a
XM_043217056.1 mRNA downstream 46228 6285922 ~ 6337572 (+) False fgf12a
unassigned_transcript_205 other upstream 13351 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 15370 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 122163 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 126223 6109573 ~ 6109647 (+) True trnag-gcc_18
unassigned_transcript_201 other upstream 158406 6077390 ~ 6077464 (+) True trnag-gcc_17
TU14569 other downstream 127483 6367177 ~ 6367954 (+) True sst2
TU14734 other downstream 450678 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 451974 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 746604 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 1265897 7505591 ~ 7582385 (+) False G10108

Expression Profile