RNA id: XM_043219896.1


Basic Information

Item Value
RNA id XM_043219896.1
length 2369
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC122325049
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 294469 ~ 316685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagaatgAAGACGGAATGAATGGTGCCTACTAGTCAACAAGCATCACCGGCCAGTGAATCAGAGCGCATGCGCAGTGCTTACGCTCTGGATGCTGCTCAATATAGAAAAGCAACCTGCCTGTTCGCAAAGGTAACGTTTCAAAGCAGAAGAAATGCCTCGAAATAGCGCATCCGACATGCAAGATGGAATGTGTATTGCCAGCCAAATGACAAAATGTGCGGACGCCGACGCTTCTCCGCGCTCCGACGGTTTCATCTTCGGTCCAAAACGCCACTTGCTTAACTGACATACGAGGATAGAGACATAAATAGTCACTGATAAAGGAAAACCGAGCGAATCTGCAAATATGAACGGCACGCTGCTTAAAAAGCGAAGGCTGGACTGTGCGTATGCGGTGCTGTTGTGGCTCCATCACGCTGTGTGGATGTGCTGCTCAGCGGCCGAAGACCATCGCTTCAGCGTTGAGGCGTGGTTACAGAGGTATGGATACATCCACAAGACGCAACCTAACATGGCTGTCCTGCGATCAGCCCAAACAATGCATTCTGCTATTGCTGCCATGCAGCACAAGTATGGACTAAACATCACTGGGAGTCTAGACAAGGAGACAATAGActggaTGAAGAAACCCAGATGTGGGGTACCGGACCTGCTTGGTGGCATATCTGGGTCCCGCAGGAAGAAGCGCTATGCACTAACTGGACAGAAGTGGCAACGCACACACATCACATACAGcattaaaaacgTCACTCCTAAAGTGGGAGCACGAGAAACGCACGAGGCCATTCGCCGGGCGTTCGACGTATGGCAAGGCGTCACACCGCTTCGCTTTGAGGCCGTGCCCTACAGCGCTCTGGAGAGCGGAAAACGTGACGTCGACATCACCATCATCTTCGCCTCTGGTTTCCATGGTGACAGCTCTCCTTTTGATGGAGAAGGAGGCTTCCTGGCACACGCTTATTTCCCAGGGCCGGGCATAGGGGGCGACACGCACTTTGACTCGGATGAACCCTGGACTCTGGGCAACCCAAACCATGATGGTAATGACCTGTTCCTTGTGGCGGTCCATGAGCTTGGTCATGCTTTGGGACTGGAGCATTCTAATGACCCTACAGCTATAATGGCTCCGTTCTATCAGTATATGGACACTGAAAGCTTCAAACTGCCTCATGACGATCTACAGGGCATCCAGAAAATATATGGTCCTCCAGACAAAAATCCTCAGCCTACAAGATTGCTGACGACCGCTACGCCTCCTCGCCTGCACCTACCGACTGACCCTCGAAAGCATGACCGACAGGGTCGCCCTCATCGCCCTCCGCAGAAGTCAAAACCAGCCCACCCCAACTCCAAACCCAACATCTGTGACGGAGGGTTCAACACTTTGGCAATCCTACGACAGGAGCTGTTCGTCTTCAAGGATCAGTGGTTCTGGAGGGTGCGAGATAATTCTGTGGTGCCTGGATACCCGATGCAAATTAGCTACTTCTGGAGAGGTTTGCCTCCCAAGATCGATGCCGTCTACGAAAACAGCGAGGGGAAATTTGTCTTCTTCAAAGGCAACCGGTTCTGGGTGTTTAAGGATACAACTCTACAGCCCACATATCCTcaggacatttctctttttggCAGTGGAATGCCCACACAGAGCATTGAAACAGCTGTTTGGTGGGAAGACGTGGCCAAAACCTACTTCTTCAAAGGGGACAGATACTGGAGGTACAATGAGGATATGAGAACCATGGACCCTGGATATCCAAAACCCATTACTGTGTGGAAAGGCATTCCAGACTCTCCACAGGGAGCTTTTGTGGACAAAGAAAATGGGTTCACGTACTTCTACAAGGGAAAGGAATATTGGAAGTTCAACAACCAGAGACTCAGAGTGGAGCCTGGCTACCCAAGGTCCATCCTGCGTGATTTTATGGGCTGCGATGGCTTACCCGCCGACCCCGACTGGGACTGGAGCCCTCCACAGGAAGAAGAACCGCCACAATATGACAATGATGACGTTGACATCGTACTCAAGCTGGAGAGCAGCGGTGGAGCAGAGAAAGCGGTGGCCATCGCCATCCCGTGCGTCCTGGCCCTGTGCATGATGGTGCTGCTTTACACCGTGTTCCGCTTCAAAAGGAAGGATACGCAGCGCCACATACTGTACTGCAAGAGATCCATGCAGGAGTGGGTCTGAGAATTAAAGCTCTCGCTCCTTCTGCTAAAACTATTTTCCTCTTCAAAATCCCTTCAAAGGTCAAAAAGTGGCTCATCTTGAGGTGCTGACTTTATGTCGGTGACTTTATGAAGGACGACATAATGAACAGCATGCCGACTTCCTGTTCCCATTGTCAGTCTCCGTAGATGGCAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247263.1 lncRNA downstream 70581 223256 ~ 223888 (-) True LOC122325194
TU12371 lncRNA downstream 72323 203565 ~ 222146 (-) False G8237
TU12358 lncRNA downstream 73479 156246 ~ 220990 (-) True G8237
TU12373 lncRNA downstream 73726 210605 ~ 220743 (-) False G8237
TU12353 lncRNA downstream 151030 142744 ~ 143439 (-) False G8237
XR_006247269.1 lncRNA upstream 81441 398126 ~ 403822 (-) True LOC122325225
TU12432 lncRNA upstream 231349 548034 ~ 551702 (-) True G8273
TU12337 lncRNA upstream 254344 571029 ~ 603940 (-) False LOC122325167
TU12338 lncRNA upstream 254344 571029 ~ 603940 (-) False LOC122325167
TU12339 lncRNA upstream 254344 571029 ~ 603940 (-) True LOC122325167
XM_043220061.1 mRNA downstream 56876 233507 ~ 237593 (-) True LOC122325145
XM_043261573.1 mRNA downstream 71432 214664 ~ 223037 (-) True LOC122360735
XM_043261549.1 mRNA downstream 89119 204050 ~ 205350 (-) True LOC122360720
XM_043261535.1 mRNA downstream 99111 192500 ~ 195358 (-) True LOC122360711
XM_043220133.1 mRNA upstream 115983 432668 ~ 445573 (-) True LOC122325182
XM_043219876.1 mRNA upstream 151911 468596 ~ 515724 (-) True LOC122325042
XM_043220030.1 mRNA upstream 247978 564663 ~ 566800 (-) True LOC122325126
XM_043219924.1 mRNA upstream 263088 579773 ~ 594221 (-) True LOC122325065
XM_043219978.1 mRNA upstream 280527 597212 ~ 601234 (-) True LOC122325090
TU12372 other downstream 70535 198628 ~ 223934 (-) False G8237
TU12376 other downstream 71324 214738 ~ 223145 (-) False G8237
TU12374 other downstream 142839 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 863260 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 1067023 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 1067405 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 1068012 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 1068412 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile