RNA id: XM_043219924.1


Basic Information

Item Value
RNA id XM_043219924.1
length 1752
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC122325065
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 579773 ~ 594221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCCTTAGTCAACATGGGAGGAGCTGGCGTGCTTTATTCTCAGTTATTGGATCAATGGGAGGAGGTTCGCTGCGAAGGGAAGTTTTACACCGGTCAAAGTTTTGAGCCGCTTCAGACGCTTCACACGGGTCGATCGTTGCCGTCTGTCGTCTCGGTAACCGAGGAAGCTCCCTTTCTTCACTTCTGGAATCTTTCTGCATTCCCGGCGGCCCAAAGCGAACATCTGCACCAGAAGATGACCGAAAACGGAGCGTTACCCCTTCGGGGGAAAGTGCTCACCGTTGACACCATGAACGCCAACGTCAAAAAGGTGGACTACGCGGTTCGCGGACCAATCGTTCAGCGCGCGGTTCAGATCGAGAAGGAGCTGAAAGAGGGGGTAAAGAAGCCTTTTGAAGAGGTCATTAAAGCAAACATCGGAGATGCTCATGCTATGGGCCAACGACCAATCACCTTTTTTCGACAGGTGATGGCATTGTGCACTTATCCACCACTACTTGATGACAACAAGTTTCCAGAAGATGCCAAAAATCGAGCGAGGCGTATTTTGCAATCATGTGGAGGAAACAGCATCGGTGCATACACAACCAGTCAGGGCATTGACTGTGTGAGGCACGATGTTGCCAGCTACATACAGCGCCGTGACGGCGGTATTCCTTCTGATCCTGATAACATCTACCTCACGACGGGAGCCAGTGACGGCATTGTGACCATACTAAAGCTGTTGACTGCTGGGGAGGGTCGTACACGGACGGGGGTCATGATTTCTATTCCTCAGTACCCTCTTTACTCTGCATCTATAGCAGAGCTGGGTGCTGTTCAGATCAATTACTACTTGAATGAGGAGAAGTGCTGGAGTCTGGACATTAGTGAGCTACAGCGCTCTCTACAGACAGCCAGGGAGCATTGCAACCCCCGTGTGCTGTGCATCATCAACCCCGGCAACCCCACTGgTCAGGTACAAAGCAGACAATGTATCGAAGATGTAATCCGATTTGCAGCTAAAGAAAACCTCTTCCTAATGGCTGATGAGGTATATCAGGATAATGTGTATGCAGAGGGCTGTGAGTTTCACTCCTTCAAGAAAGTGCTTTTTGAGATGGGTCCAAAATATTCAAGCAAAGTAGAGCTGGCATCATTTCACTCCACCTCCAAGTGCTACATGGGAGAATGTGGTTTTCGAGGGGGATACATGGAGGTCATCAACATGGACCCAGAGGTGAAGGCTCAGCTCACCAAGCTGGTCTCGGTGCGTCTGTGCCCGCCTGCTCCTGGACAAGCCCTCATGGATCTGGTGGTCAACTCCCCTCAACCTGGAGAACCCTCCTACCAAACCTTTGTGAAGGAAAGAACGGCCGTTCTGAGTGCCTTGGCTGAAAAAGCCAAACTGACCGAGGAGATTCTGAATACAGTGCCAGGCATCAGCTGTAACCCTGTGCAGGGAGCCATGTACTCTTTCCCCCGTATCACCCTACCCGAGCGCGCCATCAACGAAGCAAAGGCGAAGGGTCAGGCTCCAGACATGTTCTACTGCATGAGACTTCTGGAAGAAACCGGCATCTGTCTCGTTCCTGGCAGTGGTTTTGGTCAACGAGAAGGCACTTATCACTTcagGATGACCATCCTTCCTCCGACAGACAAGCTTAAGATCATGCTCAACAAACTGAAGGAATTCCACCAGAAGTTCACCCAGCAGTATTCTTGACTCAGTTCAACTCAACCAATCGCGGCCCTTCTGCCACAACTGACT

Function

GO:

id name namespace
GO:0006103 2-oxoglutarate metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004021 L-alanine molecular_function

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12432 lncRNA downstream 28071 548034 ~ 551702 (-) True G8273
XR_006247269.1 lncRNA downstream 175951 398126 ~ 403822 (-) True LOC122325225
TU12411 lncRNA downstream 210325 291406 ~ 369448 (-) True G8257
XR_006247263.1 lncRNA downstream 355885 223256 ~ 223888 (-) True LOC122325194
TU12371 lncRNA downstream 357627 203565 ~ 222146 (-) False G8237
TU12442 lncRNA upstream 25531 619752 ~ 635841 (-) False G8279
TU12448 lncRNA upstream 26206 620427 ~ 629491 (-) False G8280
TU12450 lncRNA upstream 26206 620427 ~ 629491 (-) False G8280
TU12453 lncRNA upstream 26206 620427 ~ 629491 (-) False G8280
TU12441 lncRNA upstream 33595 627816 ~ 635841 (-) True G8279
XM_043220030.1 mRNA downstream 12973 564663 ~ 566800 (-) True LOC122325126
XM_043219876.1 mRNA downstream 64049 468596 ~ 515724 (-) True LOC122325042
XM_043220133.1 mRNA downstream 134200 432668 ~ 445573 (-) True LOC122325182
XM_043219896.1 mRNA downstream 263088 294469 ~ 316685 (-) False LOC122325049
XM_043219888.1 mRNA downstream 263088 294469 ~ 316685 (-) True LOC122325049
XM_043219978.1 mRNA upstream 2991 597212 ~ 601234 (-) True LOC122325090
XM_043220108.1 mRNA upstream 7693 601914 ~ 603944 (-) False LOC122325167
XM_043254365.1 mRNA upstream 74079 668300 ~ 680383 (-) True gipc2
XM_043254355.1 mRNA upstream 86454 680675 ~ 685013 (-) True dnajb4
XM_043261618.1 mRNA upstream 248994 843215 ~ 875227 (-) True pigk
TU12372 other downstream 355839 198628 ~ 223934 (-) False G8237
TU12376 other downstream 356628 214738 ~ 223145 (-) False G8237
TU12374 other downstream 428143 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 585724 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 789487 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 789869 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 790476 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 790876 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile