RNA id: XM_043219998.1


Basic Information

Item Value
RNA id XM_043219998.1
length 2533
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122325106
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 559979 ~ 564990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGACTTTGTTGTTTCGACTGTCAGTTCTGCAAACTGGAAATTGAACTTGCTTGCAGGATTGCAGAACCATGCCTGGACAGAGCGGTAAGGTGCAGACGGTGCTGGGTCTGCTGGAGCCCGATCAGCTGGGCCGCACCATGACCCACGAACACCTTACGATGACGTTCGAGTGCAGCCATGTTCCCCCAGCACCTGGAGACGAGGGCCTTGCCGCAGCTCCTATTGAGATGAAGCATCTTCACTGGTTGCAGCAGAATCCATACAGCCACCACGAGAACCTGCTGTTGAATCAAGAGATCGAGGCGGTGAAGGAAGAGCTGTTGTGTTACCGTAAAGCGGGAGGAGGATCCATAGTGGAGAACACCACCACAGGCATCACCCGAAATCTGCCCATTCTGCGGCAGCTGGCCAAAGAGACGGGTGTGCATATCGTAGCTGGAGCGGGGTACTATGTGGACGTGACCCACTCCGATGAGACCAGAAAAATGACCGTtgagaagctGACTGATATCATTGTCAATGAGGTGGCCCACGGTGCAGATGGTACAGATATCCGCTGTGGTGTGATTGGAGAGATTGGTACAAGCTGGCCAATCACAGAGAGCGAGAAGAAGGTACTGCGAGCCACCGCTCATGCTCAGACTCAGCTCGGCTGCCCGGTTATCATCCACCCAGGACGACACAAAGACGCTCCCGGGGAGGCCATCCGCATTCTGCAAGAAGCAGGTGGAGATATCTCCAAAACAGTCATGTCTCATCTTGACAGGAGCATATATGATCTACGAGAATTGCTGGAGTTTGCAAAGATGGGGAGCTACCTTGAATATGACCTTTTTGGCACCGAGGTGCTGAATTACCAGTTCAACGCTGATGTTGACATGCCCAACGACAGCCAGAGAGTTCAGACCTTGGCTTTCCTGATCAGAGAAGGTTATGAAGACAGAATCCTCGTAGCCCATGATATCCACACCAAGCACCGACTGACCAAGTACGGCGGTCATGGCTTCTCCCACATCCTGAAGAATATTGTTCCCAAAATGCTGTCCCGAGGCATCACTCAGAACCAGGTGGACAAAATACTGATCGAGAACCCTAAACAATggctgacatttaaataaacctgCTGCCTTAAAAATCGATTTCATTCTTTAAAGTTAACATACCAAAAATTGAtttctgatttttattgttAGGAACTgttattaactaaattaactgaACTGTTAATTTTTGGTGCTAAAATCTTTACTTCGTTTAGCGTTAATTCAAATgcactgttaaaaatattaaaaagaggGTATAATTTAAACGAGGGTGTAAAAGGGGGTTTTTGTAGCCATTGTgagttccccaaagaacctttcagtgaacagtttttaaaagaactatttttttaGCGTGAAGAATATTTTAAGAATCTTTTTGTGCGGTGGAATGGTTTCATCGTGGAACCATTAATGCCGAGAAAAAACCTTTGAGACCCATTGGTCACACGTGAAGTTTAACACTAACCAGaatattcaaatcaaatattgACCAGTCTCCAATGATCAAAGTTCTCTTGCCACAAAAAAAGtgggtaaaataaaaacatggctCTGAGTCGTGGAAAGTAGGCGACTACGTTACTTACTAATTAGCTCGTGCGCATCCTAATAAGCGGatgcagattttctttttcgATATTGTGTAGCTGCAAACATCTCAACCAGTTTGAACATACAGTCTGAGTTGATCGAGTTTGACCATATGCCTGAAAGTAAGACTGCTTGCTGTACACATTTGTTCTTTGGCAAGCCTGATGTTTCACAGCACTTCTGATCCTTTGAAGGCATGCGTCTGGGCGGGAAAGAGAGATGGGTTTCTCAGGAGCAGGTGGCCGCTCACAGTGACTTCTCTAGTAAAATAACGACACTGTCAGGTGCTCTGTTAACCGCAAggttattacttaaaaaaaaaaacttacttatAAAAAGATGGCTTGTTAATTGATCTTTCCCGTTTATTTTTTCTGTGCTTCAACATGAAAAACCGACttccttttttaatgtatagaTGTAGGACTATTTTACACAGTCGTATACCGTTTAgtgcttttaaagaaatagctgAATATTACAAATGATGACATTACTAGGATATTTCGCAGTTGCTTTCGTTGATTGCTGCACTGCACTATACAGAGCTTTTAGTTTTATGGCAAATTTATACACGCATGCAAatcatacaatatattttattcacaattttttGATGACACTGCATATACCAGACGGcgatcatatttttaaatgaagacatttatgTAAAACGGTACAGAACTGCGGCTTGAATGCGACAACGTGTGTGCGCAGACAGAGAAATGACTCATAAAATGTAATCTGAACTATACATCCGTGCTAATGGCGGGTGCTCTGTAACAGCCTCTTCTGATCAGCCATGTGTCCATGTAAGGTAGGCACATATGGAATGATGTTAAACGATTTTCTGCTTTCACGTCCAATTAATCTCCCAATAAACATACTACAATCA

Function

GO:

id name namespace
GO:0009056 catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12308 lncRNA upstream 44251 487780 ~ 515969 (+) True G8207
XR_006247265.1 lncRNA upstream 303334 248481 ~ 256886 (+) False LOC122325207
TU12266 lncRNA upstream 308241 248760 ~ 251979 (+) True LOC122325207
TU12260 lncRNA upstream 314856 241540 ~ 245364 (+) False LOC122325097
TU12237 lncRNA upstream 336853 203646 ~ 223367 (+) False G8167
TU12311 lncRNA downstream 906 565896 ~ 566914 (+) True G8209
TU12185 lncRNA downstream 6039 571029 ~ 603945 (+) False G8151
TU12188 lncRNA downstream 6039 571029 ~ 603945 (+) True G8151
TU12316 lncRNA downstream 18372 583362 ~ 584348 (+) True G8213
XR_006247267.1 lncRNA downstream 69161 634151 ~ 634766 (+) True LOC122325219
XM_043261606.1 mRNA upstream 102475 447250 ~ 457745 (+) True LOC122360757
XM_043219987.1 mRNA upstream 315498 241451 ~ 244722 (+) True LOC122325097
XM_043220121.1 mRNA upstream 319824 238742 ~ 240396 (+) True LOC122325174
XM_043219963.1 mRNA upstream 326810 224016 ~ 233410 (+) True LOC122325083
XM_043219950.1 mRNA upstream 385212 171622 ~ 175008 (+) True wu:fi34b01
XM_043220072.1 mRNA downstream 40096 605086 ~ 609167 (+) True LOC122325155
XM_043254654.1 mRNA downstream 83994 648984 ~ 654781 (+) True zgc:153615
XM_043222082.1 mRNA downstream 93767 658757 ~ 662000 (+) True zmp:0000001127
XM_043222089.1 mRNA downstream 93767 658757 ~ 662000 (+) False zmp:0000001127
XM_043254375.1 mRNA downstream 98801 663791 ~ 667351 (+) True txndc12
TU12282 other upstream 110201 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 110201 447162 ~ 450019 (+) False LOC122360757
TU12228 other upstream 337177 214409 ~ 223043 (+) False G8167
TU12491 other downstream 234942 799932 ~ 828209 (+) False st6galnac5a
XR_006252350.1 other downstream 979783 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1613776 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1613776 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1705691 2270681 ~ 2275135 (+) False sgip1b

Expression Profile