RNA id: XM_043220030.1


Basic Information

Item Value
RNA id XM_043220030.1
length 1660
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC122325126
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 564663 ~ 566800 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTCCAACCCACCACCCACCCTCAGGTGAGAAAGCAAGGCTGTAAAGCATCTCTCAcacatttatgtttgtgttcCCAGTCTGTAACTTCGTTttcattataaacaaacaaaaagttagTCCAGGTGACGTTTACGTCAATTCGGGGAATGATATAGCGTCTTCGGTCAAAGTTAATTGACTTTCCCTGGAGCTGCAGGGaagttgaatttgtttttttggcgTTTCTTCCGCGCCGAGCAAGATTGCGCGTAAATCGCAGCGCGAGGCGCGCCCGGTGCTGTCGAGACTGGGCGTCAGAGCGCGGGTGATCGCCACGGGCGTGCTGGGTGTTGTCATGGTGCTGGTGCTGGTTATTCTCATCCCGGTGCTGGTCAACGCGGCGGGATCCGACCCGCGCTACGAGATGCTCGGCGCGTGCCGCATGGTGTGCGATCCGTACGGAACAAAGTCTCCATCATCAGCACCGACAGACAACCGCTTGGTTCAGTCCCCACCAACTTTCATTCGCGGTGCGAAAGGAGAGCAAGGGCGCTCGGGAAGGATCGGTCCGAGGGGTCAACCTGGTCCGCCGGGTCCACCCGGACCTCCAGGTCCACCTGGGGTCATCGGGGAACCGGGGCCACCAGGATTACCCGGTCCGCCCGGAGTCACCGGTGTCATAAGTGCGGCGACGTACAGCACCGTGCCCAAAATCGCCTTCTACGCGGGACTCAAAAAACAACACGAGGGCTACGAGGTGCTGAAGTTTGACGATGTGGTCACTAACCTGGGCAATCACTATGACCCCACCAGCGGTAAATTCACCTGCTCCATCCCAGGGATCTACTTTTTCGTGTATCACGTATTAATGAGAGGAGGTGACGGGACCAGCATGTGGGCTGATCTGTGCAAGAATAACCAGGTGCGCGCCAGTGCAATAGCGCAGGATGCAGATCAGAACTATGACTACGCCAGCAACAGCGTGATTTTACACCTGGAGCCTGGAGATGAGATCTACATTAAACTAGACGGAGGCAAAGCGCACGgaggaaacaacaacaaatacagcACGTTTTCAGGCTTCATGGTCTACGCCGATTAACGGCCGTGGCACGGACCGCACTTTTCATTTCTGACATCCCAACGTCATCAGAGCGAGgtcacaaaaaaagtttaacccTCAAGCTTTTGACAACTCATCAGCGCAGAGGACTAAAAACAACCGAACGTCCGAGCGGAAATAACTGAACGGCTGCACATCTCGAAGCATGAGaacacatccacacacaaattagtttttagaaaaatcactgtgatttagaaaaaaacatcttacagCGTAACACCGATGATTGTAGTATGTTTATTGGGAGATTAATTGGACGTGAAAGCAGAAAATCGTTTAACATCATTCCATATGTGCCTACCTTACATGGACACATGGCTGATCAGAAGAGGCTGTTACAGAGCACCCGCCATTAGCACGGATGTATAGTTCAGATTACATTTTATGAGTCATTTCTCTGTCTGCGCACACACGTTGTCGCATTCAAGCCGCAGTTCTGTACCGTTTTAcataaatgtcttcatttaaaaatatgatcgCCGTCTGGTATATGCAGTGTCATCaaaaaattgtgaataaaatatattgtatgatTTGCATGCGTGTATAAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12432 lncRNA downstream 12961 548034 ~ 551702 (-) True G8273
XR_006247269.1 lncRNA downstream 160841 398126 ~ 403822 (-) True LOC122325225
TU12411 lncRNA downstream 195215 291406 ~ 369448 (-) True G8257
XR_006247263.1 lncRNA downstream 340775 223256 ~ 223888 (-) True LOC122325194
TU12371 lncRNA downstream 342517 203565 ~ 222146 (-) False G8237
TU12337 lncRNA upstream 4229 571029 ~ 603940 (-) False LOC122325167
TU12338 lncRNA upstream 4229 571029 ~ 603940 (-) False LOC122325167
TU12339 lncRNA upstream 4229 571029 ~ 603940 (-) True LOC122325167
TU12442 lncRNA upstream 52952 619752 ~ 635841 (-) False G8279
TU12448 lncRNA upstream 53627 620427 ~ 629491 (-) False G8280
XM_043219876.1 mRNA downstream 48939 468596 ~ 515724 (-) True LOC122325042
XM_043220133.1 mRNA downstream 119090 432668 ~ 445573 (-) True LOC122325182
XM_043219896.1 mRNA downstream 247978 294469 ~ 316685 (-) False LOC122325049
XM_043219888.1 mRNA downstream 247978 294469 ~ 316685 (-) True LOC122325049
XM_043220061.1 mRNA downstream 327070 233507 ~ 237593 (-) True LOC122325145
XM_043219924.1 mRNA upstream 12973 579773 ~ 594221 (-) True LOC122325065
XM_043219978.1 mRNA upstream 30412 597212 ~ 601234 (-) True LOC122325090
XM_043220108.1 mRNA upstream 35114 601914 ~ 603944 (-) False LOC122325167
XM_043254365.1 mRNA upstream 101500 668300 ~ 680383 (-) True gipc2
XM_043254355.1 mRNA upstream 113875 680675 ~ 685013 (-) True dnajb4
TU12372 other downstream 340729 198628 ~ 223934 (-) False G8237
TU12376 other downstream 341518 214738 ~ 223145 (-) False G8237
TU12374 other downstream 413033 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 613145 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 816908 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 817290 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 817897 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 818297 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile