RNA id: XM_043220789.1


Basic Information

Item Value
RNA id XM_043220789.1
length 3072
RNA type mRNA
GC content 0.53
exon number 15
gene id dvl3a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2620842 ~ 2632556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCGGCGTCAATGAAAGCAATACAAAACCCGCTGCAAGGAGAGCGCAGGGAAGCTCTCCGAGGAGCCGCGGCATTCCTGACCAAAATAAGCTTCTTCATCGCGCGTTTCACGCACTGTCCTCCGCTCCCACACGGCGGGACGCGGCGAAATAAGAGCATGGGTCGCTGATCGCCTTTCGGACCCGTCGGCTCATGGGATATTCGCGCTGATACAGAAGATTCCTGGGAACTCCGGAGGAAGgcgaagaaagaaagagagaacgggattaaccaaaaaaaagtcaactgGCGGGCGAAAGCGAGCAGAAGCCCACTGTGGAGGGGCATCAGGGTCGCCCCTGCGCCGGATGACCGCCGTTCACTTCTCCCCAGCGGTCTGCGATGGGGGAGACCAAAGTTATCTACCACCTCGACGACCAGGAAACTCCATACCTGGTCAAACTGCCCATCCCTGCCGAAAGGGTCACCCTTTTGGACCTGAAAAATGCCCTCAAGAAACCAAACTacaagtttttctttaaatccaTGGACGATGACTTTGGGGTGGTCAAGGAGGAAATCACTGACGACAATGCGAAACTTCCCTGTTACAATGGCCGCGTGATTTGCTGGCTGGTGTCGTCAGACGGCTCCCACTCAGACGGATGCTCGGTGGCGGAGAGTCAGTCCGAGCGACCGCCGTCTCACGAGAGAAGCCAAGGCATTGGAGATTCCAGACCCCCGTCCTTCCATCCAAAGGCTGCAGGCAGCCGGCACGGTGTGGACGATGAAACGGAGACTGATTCGGTCGTGTCGCACAGAAGGGAGAGGGACAGATCGCGCAGGAAACACTCACATGAGCACTCTGGAGGAAGGCAGAATGGCTACTCGCGAGGCGGCAGAGGCATGGATCTGGGAGGTTATGACATCTGTGACAGCCGTTCTTCCCTCATGAGCAGTGAACTGGAATCAAGCAGCTGTTTTGACTCGGATGACGGCTCCACCAGCCGTTTCAGCAGTGTTACAGAGCAAAGCGGCTCGTCCAGGCTGATGAGAAGACACCGCCGGCGGAGACGCAGACCCAAAGCCCAGCAAATGGAGAGGTCTTCATCTTTCAGTAGCATCACTGACTCCACTATGTCACTGAATATCatcactgtcactttaaatatgGAGAAGTATAACTTCCTGGGCATCAGTATCGTGGGTCAGAGCAACGAGCGCGGAGATGGAGGCATCTACATCGGCTCTATAATGAAGGGTGGAGCGGTGGCAGCCGACGGGCGGATCGAGCCGGGTGACATGCTGCTGCAGgtGAATGACATTAACTTCGAGAACATGTGCAACGACGATGCCGTACGAGTGCTGAGGGAGATCGTGCATAAGCCTGGacccGTGTCGCTCACTGTGGCCAAATGCTGGGACCCAAACCCAAACAGTTGCTTTGCTTTGCCGAGGAGCGAGCCCATCCGGCCCATTGACCCTGCAGCCTGGGTGTCCCATACGGCAGCCATGACGGGTGTCTATCCTCCCTACGGCATGAGTCCCTCCATGAGCACGGTCACCTCCACCAGCTCTTCCATCTCCAGCTCCATCCCAGAGACGGAGAGATTTGATGACTACCACCTGTCCGTCCACAGCGACATGGCAACAGTTGCAAAAGCAATGGCCTGTCCAGACTCGGGACTGGAAGTTCGAGACAGAATGTGGCTGAAGATCACTATAGCCAATGCTTTCATAGGCTCTGATGTGGTTGACTGGTTGTTTCATCACGTGGAGGGCTTTGCAGATCGCCGTGAAGCACGAAAGTACGCCAGCAACCTGCTGAAGGCCGGCTTCATCCGCCACACGGTCAACAAAATCACTTTCTCAGAGCAGTGCTACTACATTTTTGGAGATCTTTCTGGCAACATGGCCCATCTCTCTCTGCATGACCATGACGGATCCAGCGGCGCGTCCGATCAGGACACTCTGGCTCCCTTGCTTCACCCCGCTGAAGCTCCCTGGCCGACCGCGTTCCCTTACCAGTACCCGCCGGCCCATTCCCTCCCGGATGCGGCTCACAGCTACTCTGAAGCCGGTGGAGGAAGCGCAGGCAGCCAGCACAGCGAAGGGAGCAGCGGTTCAAACTGCAGCTGGAGCAGGACTGAGGGGAAACCCGCGGCCGGAGACTTCAGGTTAGGAGGAGGAAGCGAAATGGGCGACGCTCATGACTTTGACTTCCGCAGAGACCGAGCCCCCAGCGAGCGCTCGGTGCCGCCCAGCGAGGGCAGCGTGCGCAGCTCCCGATCTCACAGCTACAGCCTGAAACAGGGGTCCGCGCGGGCCGGCCCGGGGTCGCCGTCCGGACGCCATCTTGCCAGCATTCCCCCCGAACTCACGGGCTCCCGGCGCTCGTGCAACACAGCCAACGGGGAGTTCTTCGTCGACATCATGTGACTTGCAAGCAGAAGTGCCCAGAACTGTTTTTTGCCTTacgaattacaaaaaaaaaaaaaaaaacgtggccTACTAGTGCAGCCGATTAGAATTAGGATTAGTGCTGACCTAAAATTCAGTAGCTTGTGAGCCCCCGACATCACTTAGGTCTTAGAAATTAGTCTAATGAAGCATAAGCGAGCAATTCGTGCTTACGATAACAGATCAAGACGTTTTACTAAATGTACTATATCACCTCAAAATAACTGGGACATGTGCTGTTGGAGAAAATGGAAtgatgggagaaaaaaagagcgAGGTTTTGAGAGAAATAGCAATAATTGAATGGGATTTAGTTACTACACTATATGGGTGTGAGGATTCATGGTGAATGTAGTCCAGCCAAGGACATAAATGTCAAATTTCCAAATTTCTGTTGCCCTTGTATTTGGAGGttcttaaccttttttttttgcccttttaAATTTTTACTCTCTGTAAATGTCTCCTGCAGATATTTCATTATTCATGAATCTTGTTTTTACTGAgaatatatttttcagtgtttgtcaGCTATATTGTATTGGGAGAAATTTTTGAAGTACCACGttaaggagatttttttttttttttttaatttataaatatagttttattgtgACCTGCTTGGAGTA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003148 outflow tract septum morphogenesis biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13127 lncRNA upstream 1485 2617268 ~ 2619357 (+) False LOC122355548
XR_006252229.1 lncRNA upstream 1964 2617207 ~ 2618878 (+) False LOC122355548
TU13145 lncRNA upstream 7738 2612522 ~ 2613104 (+) True G8764
TU13085 lncRNA upstream 11323 2511622 ~ 2609519 (+) True G8724
TU13102 lncRNA upstream 175642 2443588 ~ 2445200 (+) True G8737
TU13130 lncRNA downstream 5986 2638542 ~ 2669943 (+) False LOC122355548
TU13183 lncRNA downstream 186516 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 186516 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 186516 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 279735 2912291 ~ 2912787 (+) True G8816
XM_043253930.1 mRNA upstream 13986 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA upstream 13986 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA upstream 13986 2598778 ~ 2606856 (+) False ap2m1a
XM_043254691.1 mRNA upstream 39577 2563177 ~ 2581265 (+) True abi1b
XM_043224252.1 mRNA downstream 12439 2644995 ~ 2657785 (+) False LOC122328513
XM_043224241.1 mRNA downstream 12561 2645117 ~ 2657785 (+) True LOC122328513
XM_043218780.1 mRNA downstream 25847 2658403 ~ 2661029 (+) True ahsg2
XM_043255474.1 mRNA downstream 42814 2675370 ~ 2689627 (+) True LOC122356587
XM_043255488.1 mRNA downstream 42816 2675372 ~ 2689627 (+) False LOC122356587
XR_006247877.1 other upstream 2393 2618316 ~ 2618449 (+) True LOC122329004
XR_006247876.1 other upstream 2708 2618002 ~ 2618134 (+) True LOC122328998
TU13140 other upstream 28084 2591634 ~ 2592758 (+) True G8760
TU13121 other upstream 65521 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 65521 2549892 ~ 2555321 (+) False zgc:55943
TU13150 other downstream 2685 2635241 ~ 2636586 (+) False G8768
TU13151 other downstream 2685 2635241 ~ 2636586 (+) True G8768
XR_006252354.1 other downstream 42814 2675370 ~ 2689627 (+) False LOC122356587
XR_006252450.1 other downstream 97080 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 982926 3615482 ~ 3617043 (+) True G9154

Expression Profile