RNA id: XM_043220819.1


Basic Information

Item Value
RNA id XM_043220819.1
length 766
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC122326129
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2291463 ~ 2293495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGGTTTGTGGAAGAGTCGCATCAAAGCGGTTTTCGTAGGATAGCATTTTCCGCGATAAAATGTCTGATTTGGCGAAGGAGAAAGCGGCACGTCTGCTGAAGAAGCGCGGAAGCCTGTCTTCTCTGGGCAGTCATGAAGTCCGAGCTAAAGAAACCTTTGCCAGAACCAAGGACTCTATCAGTACAGTGTCTTACATGGAGGAGCCCGGACATCATGATGATATCCCACGACCTGTGGTGCAGATGGAGAACACCTATCAGCTCAgCCCCGCGCGACATTTTCCGGTGTTAACAGTGAAGGACATTCTGAAGGACGTGTTGACCAGCTACCTGCAGGAGGAGAAATATGAACCCGAGCTGTGCAGACAGATGACCAAAACCATCTCTGAgGTGGTCAAAGCCAGAGTTAAAGATTTGATGATTCCCCGCTACAAGATCATCGTCGTCATCAGCATTGGTCagatcagagaccagaacatgCGCATGGGGAGTCGATGCCTTTGGGACGAAACGCATGATAATTTCTCCTCGCATACTTTCAAAAACAGCTCGCTCTTCGCCACCGCTACCGTCTATggtgtttattttgaatgactGTGTAAGAAGCTGGCTTTTAGTGACGAGTGATTTCAGCCAACCAGTGGCATCTACACTACATATTTAAGTTAAATgacctttaaaatgacttaaaataactAGAGGTTGAGTAAGTATGAGGCAGTTCTGGTTCCTCAACATCTCCCATAATGATAAGTTAAATGCAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13076 lncRNA upstream 1423 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 3247 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 37872 2249222 ~ 2253591 (+) True G8703
TU13054 lncRNA upstream 64212 2226905 ~ 2227251 (+) True G8707
TU13053 lncRNA upstream 69389 2221708 ~ 2222074 (+) True G8706
TU13102 lncRNA downstream 150093 2443588 ~ 2445200 (+) True G8737
TU13085 lncRNA downstream 218127 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 319027 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 323712 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 323773 2617268 ~ 2669597 (+) True LOC122355548
XM_043257962.1 mRNA upstream 3291 2270679 ~ 2288172 (+) True sgip1b
XM_043257912.1 mRNA upstream 25938 2213103 ~ 2265525 (+) True pde4bb
XM_043257920.1 mRNA upstream 25938 2231999 ~ 2265525 (+) False pde4bb
XM_043257951.1 mRNA upstream 82240 2205194 ~ 2209223 (+) True LOC122358163
XM_043257930.1 mRNA upstream 103798 2178766 ~ 2187665 (+) False LOC122358138
XM_043224306.1 mRNA downstream 16042 2309537 ~ 2316103 (+) True bcl6ab
XM_043258538.1 mRNA downstream 29216 2322711 ~ 2327443 (+) True LOC122358683
XM_043258628.1 mRNA downstream 97383 2390878 ~ 2391452 (+) True LOC122358767
XM_043258526.1 mRNA downstream 113247 2406742 ~ 2419955 (+) False LOC122358652
XM_043258523.1 mRNA downstream 117674 2411169 ~ 2419955 (+) True LOC122358652
TU13065 other upstream 16328 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 102098 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 102098 2178766 ~ 2189365 (+) False LOC122358138
XR_006252350.1 other upstream 737349 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1463254 799932 ~ 828209 (+) False st6galnac5a
TU13086 other downstream 105459 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 117670 2411165 ~ 2419955 (+) False LOC122358652
TU13121 other downstream 254618 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 256397 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 256397 2549892 ~ 2555321 (+) True zgc:55943

Expression Profile