RNA id: XM_043221183.1


Basic Information

Item Value
RNA id XM_043221183.1
length 3993
RNA type mRNA
GC content 0.46
exon number 28
gene id si:dkey-119f1.1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1880691 ~ 1901747 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCCCTGCGAACAGTCAAAGCGCGCGAGGAGCAGAAAGGTTTAGTGAACTTTGActcaacaataaaaacaacaaaaaccacAATTACTTTAATTCTGTGGCTGAAACAGCAGGAGATGTCGAAGAGGAAGAGCAGTAATTCAGGGCAGACGCCCGATAAGAGGAGCCGGTTGTCTCAACCGGATCTCTCCGATGAGGCTGAAACGGACTACTTCAGTTCAGGAGATGGCACGAGCACATCACAGAGTgtcaCAGGTGAAGTGGGCATCATAGAGAGCATCTCTCTAAGGAACTTCATGTGCCACTCGATGCTTGGTCCCTTCGCATTCGGTCCAAACGTCAACTTTGTCGTAGGAAACAATGGAAgtGGAAAAAGTGCGGTGCTGACAGCTTTGATTGTAGCCCTGGGAGGTAAAGCTCACACCACGAACAGAGGCTCCTCTCTCAAAGGCTTTGTGAAGGAAGGAGAGAGTTCTGCGGATGTGTCCATCACCCTGAAGAACAGGGGTCGTGATGCGTATAAGCCAGAGACGTTCGGGAAGTCCATCATCATAGATCTTCGTATCTCCAGTGAGGGAATACGGACATATAAACTAAGAAGTAAAACAGGTCAGTTAGTGTCGTCAAAAAAGGAGGAGCTGATCTCCATTTTGGATCACTTTAACATCCAGGTGGACAATCCGGTCTCCATCCTAACTCAGGAAATGAGTAAACACTTCCTCCACTCCAAAGGAGAGGGCGACAAATATAAAtttttcatGAAGGCCACTCAGCTTGATCAGATGAAAGAAGATTACAGCTACATCATGAAGACCAAGACCATGACCCAGAATACAGTAGAGAAGTACAGAGAGACTCTACAAGAGCTGAAGAGAAAGTACCATGAGAAAGAAGAGCGCTATAAAAGTCTGGCTTCACTTGATGAAATGCAGCAGAAGTTGAATGAGCTGAAGAATCAGATGGCCTGGGCTCTGGTGGCAGAAGTGGAGCAGGAGATGAAGCCAATGAGAGAACGAATCACAGCTGAAGAGAAGGCCACTGTCAAATATGACCAGAAAGTGGAAGAGTGGGAGggGAAAGTTCAGGAGGCCAACAGGATATTGGGACAGTTGCAGGATCAGCTGGAGGGTGTGACACAGCGAATGCAGCAGCTGCAGCCACAGTGCACTGAGCTGAAGAGCCGAGCACATGTGCGCAACCAAGATCTCAAAGCCGCCGAGGCTGGTCTTCATCGTAAAAAGACCAACTTGAGAGACCTTGAAAAGGATAAAGATCAGCTCAACAAGCGGATCCGAGAACTCAAACACAGCATAAGTCAGACGAACTCGGCTGACACTCATGCTCGTGTGGAGAAGATGAGTCACATTGAGGCTGCGCTGGAACAATTACACTTCCAGGACTCCACTCTGGCTCAGCAGATCGATCAGTTTCAACAGGCCTGCGCCGCAGCTAAAGACAGGCTGAGTAAAATGAGTTGTGAAAAGCAGGATCTGCTGCGTGCGATAGAATCTAAACAGCGTGACCTGTCTGCAATGGAAAAAAGTCGAGCTAACCGACTTTGTCGTTTTGGAGAGCATATGCCAGCACTGCTAAGGGCTATAGATGAGGCTGACCAGCGGGGTCAGTTCAGGAAGAAACCTGTTGGACCTCTCGGATTCTGTATCCGACTGCAGGATACGGAGCTGAGTCTTGCAGTGGAGTGTTGTCTGAAGGCTCTGATGTTAGCTTTCTGTTGTGATAACCATGCTGACGAGAGAGAGCTACAGAAAATCATGAGTCGCCTCTTCCAGCATGGCAGACGACCTCAGATCATCGTTAGCACATTTACCAACAGGGCATATGACGTCAGGGGCAGGGCTGTCAGTCACCGTGAATATCCAACTGTGCTCCAGGCACTTGACATTGAGAATCCAGTTGTGTCCAACTGCCTGATCGACATGAGGGGAATTGAAACCATTCTGCTCATCAAGAATGCTAAAGATGCGAGAAGGGTCATGCAGAGTGTAGAGCGACCAAATAACTGCAGGGAGGCCTTCACGTGTGAGGGGGACCAGGTCTACTCTAACCGTTACTACTCCTCCGAACAGAGCAGAGCACTCTACCTCAGCAGAGATGTCGAAGAGGAAGTCAGACATTTGCAGTCTGCTTTACATGCCCAGAGAACACATTTGGATCGATTTCAGCAGCACATGCAACTGGTCACCGAGGACGAGAAGCAGAACCAAACTCTTCTTCGCATAGCCTACGAAGACCGCAAGAAAGCCCAGGAACGTTGTCGGAAGCTTAAAGCAGAGCTGGCAGAATTGCAAAATGTTGAGGAACCTCAGTCAGAAGACTTGAAACCTTTGGAAGAGGAACTGGAGGAGCTCAGCAGCCGAATAAGTGAGTGTCGAGTGGAATCTGAAGCTGCACAGAATCAGGTGCTGACATACAAGAAAGAATATGAGGAGGCTGAGCGGCTCTCCCGGCAGCAGAGGGAAGCTTTTAACAGCATCGCAGAGGAAGCTGAGCCCATTAAGGAGCAATTGAGCAACAGCGATCAGGATTTGGCGAGGagtaaacatcataaaaaacaCTATGAAGAGAAGCGGAAAGCCCATGTGAGCATGATTGAGACACTAAAGAACGACTTGAGTGAAAAGGACCAGCTGTTACAGACTTCCATAGTGAAAGCCTCAGAAATTTGCCAAGAGCGATTGGTTGTGAAGAGAACGGCAAAGAGTTTGGACAGCGAGATCAGCCGCCTTAGACACAAGATCAACACACAACAGGACCAACAAGGAAACAGAGACACTATCATCAGGCAGTTCCATGAGGCGAAGGAAAACTTCAACAAAATAGCCCGACAGGTCAAGGGTCTGGAGAAATTCATCCACCTGTTATCTGAGGTCATGAACAGCAGACACAGCGTATACTCCGAACTGAGAATGTATCTTTCTGTACGCTGTAAGTACTACTTTGACTCCATGCTGTCTCAGAGAGGATACATAGGGAAGATGACCTTTGACCACAAGAACGAGACTCTCTCCATATCAGTTCAGCCGGGGCAGGATGGTAAGGCCGATCTGAGTGACATGCGTTCACTGTCTGGAGGAGAGCGTTCGTTTTCGACCGTGTGCTTCGTTCTGTCACTGTGGGCCATAGCTGAAGCTCCGTTCCGTGCCCTAGATGAGTTTGATGTGTATATGGACATGGTGAACCGGAGGATCTCTATGGACATGATGCTGAAAATCGCTGCCAGTCAGCGCTACAGacagtttatttttctcacacCACAGAGCATGAGTTCTCTGCCAGTCAATAACCTGATCCGCATCCTCCGGCTGAACGACCCCGACCGCAGCCAGTCAGCTCTTCCCTTTGGTCAGAGGAACCCAGAATAAAGCTGCTGAGcatcatacatacatatgtgtatcAGGGAAATCAAGTCAAATCAGGCAAAGTCCTTACAGCTGACAGCTGCACTTTACAGTTCTATAGCGCACAGGTTTACAGGCTTTCTAAggtcatttaaatgaacatttaaaactaattttgttatttaaaactgCTTTGTGGTGCACTTTAAATtgatctaaaataataatagttaggttttataaaaatgtttgtgattGCAATGTTATTTGCATTTGTACCTGTTGAGTAAGGCTAGTTATAGCTTGTTgctgtcatttgtttttatttgattttcagtcttctgttgttttattttcaacactgaactaattaagaaattaaaattgtgtAGTTTAACAAGAAATCATTcatcaaaaatagttttgtattACTGGTGTAACAGTATGGAGAAATGAAAAAGTCTGTTTCAGTTGAAGAGAATCACATGAGAGACGTTtccctttttttatatttacagcatGTTATGAGTCTTTGAACTTTGACCTTGAATTCATGCGGCTTCTGAATGGGCGGAATGCAAATGATTCTGTAAATAGTGCTCTCCCAGTAAAGATTATGACACAGTCACAAGA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12857 lncRNA upstream 199659 1681427 ~ 1683093 (+) True G8556
TU12760 lncRNA upstream 208997 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA upstream 246130 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA upstream 246130 1632316 ~ 1636622 (+) True G8519
TU12698 lncRNA upstream 457457 1415326 ~ 1425295 (+) True G8469
TU12881 lncRNA downstream 3619 1905366 ~ 1910679 (+) True LOC122360854
TU12890 lncRNA downstream 16959 1918706 ~ 1919313 (+) True G8585
TU12891 lncRNA downstream 17665 1919412 ~ 1922223 (+) True G8586
XR_006253155.1 lncRNA downstream 24113 1925860 ~ 1929567 (+) True LOC122362698
TU12886 lncRNA downstream 34167 1935914 ~ 1936759 (+) False arl14
XM_043221825.1 mRNA upstream 5866 1874022 ~ 1876886 (+) True rgs13
XM_043218894.1 mRNA upstream 15561 1864505 ~ 1867191 (+) True rgs1
XM_043218902.1 mRNA upstream 15561 1864507 ~ 1867191 (+) False rgs1
XM_043224318.1 mRNA upstream 27517 1848086 ~ 1855235 (+) False rgs18
XM_043261705.1 mRNA downstream 1320 1903067 ~ 1909462 (+) False LOC122360854
XM_043264249.1 mRNA downstream 21305 1923052 ~ 1932630 (+) True ppm1la
XM_043224371.1 mRNA downstream 31765 1933512 ~ 1936379 (+) True arl14
XM_043261119.1 mRNA downstream 55429 1957176 ~ 1971483 (+) True ipo13a
XM_043261137.1 mRNA downstream 55429 1957176 ~ 1971483 (+) False ipo13a
XR_006252350.1 other upstream 328638 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1054543 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1432733 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1432733 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1659709 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 277019 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 277019 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 368934 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 497207 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 509418 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile