RNA id: XM_043221475.1


Basic Information

Item Value
RNA id XM_043221475.1
length 6615
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC122326519
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2083675 ~ 2156239 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGAATCTCCGGGAGACTCGGTGAAGGAGCGACGCCATCCGGACGCGCTTTTGTTTGTGGATGAACGCTCTAAACCCTTTTCGGAAATGTGGACAGAAATtgggaaaatattattttttcattttttagtttgGGAGTCGTACCGCGCGAAAGGTGCTGAAACCGGCGCCGAGGCGGAGTGCGAGGACGGACAGTTTCAGTGCAACAATAAGAGATGCATTCCCACCATATGGAGATGCGACGACGATGATGACTGCTCCGACAACAGCGACGAGGAGAACTGCCTGAAGAACACATGCGCTCCCTCAGAGTTTGCGTGTGCGAATGGTCAGTGTGTTCCTGGACGTTGGCGGTGTGACGGAGAACCCGAGTGTCCAGACGGGTCGGATGAAGCTGATGCCACCTGCACAGTCAAACAGACGTGTCCGCCGGAGAAGTTTGACTGCGGAGggaagtgtgtgtctctgtcctGGCGGTGCGACGGCGAAAGAGACTGCGAAAACGGTGAAGATGAAGCAGACTGTGCAGCAGATGCCAGGTCCTGCTCGGCAGGGGAGTTCCAGTGTCGTAACCGTAAGTGTTTAGCACCGGTCTACGTGTGTGACGGCGACGACGACTGTGGAGACGGCAGCGACGAGGAGAAGTGCTCTCCACCCACCTGTGGGCCGCACGAGTTCCGCTGTAACAGCTCTGAGTGTGTGCCTCAGCCCTGGACCTGCGACGGAGACCCTGACTGCGCTGATGGCTCGGATGAGTGGGCGGGGCGATGCGGGGGCGGGGCTGGACGACCGGCTCCGCCCCCCGCCCGGAGACTGCAGTGCGGTGCTGGAGAGTTCCGGTGCGGCAGCGGAGAGTGTGTGAAACTGGCCTGGAGGTGCGACAGGGACCCTGACTGCAAGGACAAGTCAGATGAGGTCGACTGCCCTCTGCTCACATGCCGGCCCGATGAGTTCCAGTGCGGAGACGGATCCTGCATCCACGGCATCAAGCAGTGCAACAAAATACACGACTGCCTCGACAAAAGTGACGAGGCTGGCTGTGTCAACGCCACAAAGTGTGAAGGACCTCTGAAGTTCCTCTGCAGGAATGGAGAATGCATTGACGGCAGCAAGGTGTGTGATAATGTGAAGGACTGCAAGGATCGGTCAGACGAGCCCAAGAAGGAGTGCAGTTTGAATGAATGTTTGATTAACAATGGAGGCTGCTCACACATCTGTGTGGACCGTCCCATCGGATACGAGTGCCAGTGTCCCGCTGGCTACAAGCTTCTGGACAAGAGGACATGTGGAGATATCGATGAGTGTGAGAACCCTGATGCTTGCAGTCAGACCTGCATTAATCTGAAAGGAGATTTCAAGTGTGAATGTCACCCGGGTTATGAGATGGACCCCGTGAGCAAGACCTGCAAAGCTGAGGGAAAAAGCCCTTACCTGATGTTCACGAACAGACACGAGATCCGACGCATTGACCTGGTGAAGAGGGACTACACGCAGGTGGTTCCCACGCAGAAGAACGCCGTGGCTATTGATATCGACGTCGCCGCCAACCGCATGTACTGGTGCGACCGCTTTCAACACAAAATATACAGTGCTTACATCCACGAGGCGAGCGACCCGTCTCGACACGTTACTCTGATCGACTCCGAGCTGCATTCCCCCGAGGGCCTGGCTCTGGACTGGGTCCAGCACAACCTCTACTGGACCGACTCGGGCGACAGAACCATCTCCGTGGCTTCAGCGGATGGCGGCAGGAGACGAGTGCTGATCAGCACCGACCTGAGCGAACCGCGAGCCATCGCCGTGGACCCGGAGAGAGGGTTCATGTATTGGTCTGACTGGGGCATCAGAGCCAGGATTGAGAAGGCTGGCATGAACGGTGTTGATCGACAGGTGTTGGTGTCTGAGGACATCGAGTGGCCCAATGGAATCACACTCGATGTGGTTGGTAAGCGCTTGTACTGGGTGGACTCGAAACTGCACCTGATCTGCAGCGTGGATTTAAACGGGGCCCATCGCAGAGTCATCCTGTCTTCCATCGAGAGACTCGGACATCCGTATGCCCTTGCTGTGTTCGAGGATCGCGTGTACTGGACGGACCGTGAGAAGGAAGCTGTCTACAGTGCAAACAGACTCACAGGACAGGATGTGACCAGTCTTGCCGAGCACCTCAATGACCCTCACGACATTGTTGTTTTTCACGAGCTGAGCCAGCCTGCGGctcctGACAGCTGTAACCTGAGCGGTGTGACTAACGGAGGCTGTGACTTCCTGTGTCTGCGAGCTCCTCAGATCAGTGAACACTCACCCAAATACACCTGTGCTTGTCCTGATGGGGAGGAGCTCAGCCCTGACACACGTCAGTGTGTACCCGTGCAAAATGAGACTGCGATCACACCTACCGCCTCTATCAACATCGGCAACGAGACAGGGGCTGGCCGGGCACAAGAGTCTCCTGCAGCTGTGACATCTCAGTCTGACAGTATGGCTGAAACCACTCTCTCGTCACTCCTCACCTCCGGCCCAGAGGAACCGGCCGTCTCCTCTAATACTACAGCAGAGCACAGCCCCACACAAGTGTCCAGGACCACACCAGACAGCCTGAGCAACCTGTCTCATCACTCTGGCAATGAGTTGTTTCTCCTTGGCCGTAATCTGACAGTGGCAGTGCTCGGAGTCGTAATTCCCATAGTGGTCTTCGGAGTGGTGTGTGCCGGCGTTTACCTCGTTTACCGCAATTGGAGGAGGAACAGCACCAAAAGCATGAACTCCGACAACCCCGTCTACCGCAAAACCACGGGAGAGACAGAGGAGGACGAGATTCACATTGGTCGGACTGACGGGCTCGCTGGCCATCACCACCCTTACCCCGGGCCCGTGGTCGGCATGACGCCGGTCGGTACGGGGACGTGCCCGCCATTCATCGCTCTGCCTCTGGGGACCGGTTTACCAGACCCTGCCACACACTGGTACACAGAGCAGCCCACCATCTCTAGTACTAAGTGAAAGAGAGGACGACTCTAGAAATACTGTGAGCGCAGGGAGACACGTGGGTGCCAAGCTATGCAGGAACTGAATGGCATTTAGCGATCTGAATCATTCTTAACATGCCCAGGTATTGAAGCAGGCTGGAGCTGGATTGATTACTAAACAAAAGGTTTAGACATTTCAGACCCGTATTCATTTAGGTCCATTTTAAGCGTCATTTTATTGCTGGTTGGAACCACCAAgtcttttcaaacctgcattatttatatttatcttataATCCTAGGCAAATCTAGCACTGTAACCGGCATTAAggttaatacataaatatggaAACTAGTCTATTATAACGGTCCACCTGTCCAGCTAAAGCTGCAGAGAGAAACCGTTTCTGATCCTTGGCagtatttcatttagtttccaaaattaacaaattaattagaTTACAATTTACAATGTATCGCATCATAAAGTACCTTTTAATAGGCTTAACGAAAATATTAGAcgcaattacaaaaataacacttccGATTGTAGATCTTTGATGGCTCAAGGGCAAATTTTATTTGCTTGGAATTgtttaataatgctaaaatatataaacagcgAGCCACATATCTAAAATTATATACCTGTATCATATTATACAGTACAACTCGTCTTTTAATAACTTTCGAACTATTACAGGCATAATAACACAAGAGGAGttaacatgaaatcaaaatgaacctATGTCATACTGTACGCTTTTCATCTGTGCATATGATtccaaagaaaatataaaacttgATTCTGAATGCTGAAACAATAGTTTTTTGGCTAACAGCATTACTAATAACTTtaacatgaatatgaatatgaatatcgTCATGATCCATTCAATTCCCAGTGCATAAAATCAAGTCCTGCCTTTTTCCTCGTTAAATGTTCAAATTTTATTTAGGAATAATTGATTTCAACAGTAATTAATGCTAGAATGTAGGGATGCATGATAATTGATTTTTGCTGATATCCGATATGCcgatatttttttacttatttttatataatgctaTATTCCCTTCTATTTGGATACAAGACAAAGTCTCTCCGGTGCAGCTAAATATTCAgaattttggttatttttttaacatgaacatatttgttaaaattaaatagtaaaaatgttttttggacaGTACATTGAAGCTTtgaaaataactgtaaataaactatatatcaaACGCTGCACAGATTAAATACAGTCAATCTAATCATCATTCAGGCAAAACTTTTCTTCAAGAATGAGGCAGACTCCCTGAGAACATGTGAGTTTAATTATCGGCAAAACATATCGGCATCATTTTTCATATCGGGCCAATGCTAATATATTTAAAGCCATTATCGGCTGATTCCTATATCAGTCCGATACTATCATGCATCCCTACTGCAgtgattacattttaagttttgaGCTTAGAACGCAcccaagaaataaaaatatcgGTCCAAAAATATTCCCAAACATGTTTTGTCCGTCTCATCggtattatacattttttataggtgtgtttgtgtttattccATAGAGAGACATTGTATATTCATCACGTGCATGCAAATGAAAAGCCATTGTCCTTGGCTTCACACGACTGTCGGGTCTCTGTGGGGCTCCTCCGCACTGCAGCTACGACTTGGCAACACACCGAAATTGGCCGAGTACCCCGGTTAGTGGAACAAACCCCAGCGTAATCACCGCGATCCGGAATAGACGTTAGGAGGGTCAGCGCGAGTGCGTTACACAGCGGGGTCTCTGGTGGTTCACGCCGAGCTGGCCGTAAACCAGCGGTAATTTATGAAATGTCACAGTTTCACACGTCTGTTTCTGTTATTGGAGTTGTCGCATGCTGAACAGGTTTGCCGTGCCGCCCACTTACAGTACGttcactttcatgttgttgtttATCTAGAAACGGGGAGAACATTAGCTGATAGTCGCCCCAAGGGTCTAGCGTAGCTACAGGCGCCGAGCTAAAGGTTACGTAAAGCACTATGTTTACGTCTAAACGCATTAGAATCACGTTAACGTTGGGAAAAAAGTGACTGGGACTGGCATATGCGCGGACAGCCTGCTCGGCAGATCCAGTGCTCCCGCCTCGCTGTAATAGACGTACCGACCTTTAAAGACGCTCTGAAAGGCCATACATTCCAAATGCTGGACATTTTTTCGCGCCCCTTGTTTTTAACACGGGGTACCTCTGCATTCTTCTGTCACGTGCTGTGGGAACGCTTGGTTTTGTCTCAGGGAGACGGTGGAGGGTTTCAGTTAGTCATGACGTCGGAACGGGAATTAACGTGTTACAATTCGTTCACTGTCGAGAAAACGTAAGACGCAGATGTATAGAGAGCGGCTTCGGTCAGAGACAGATTGGTTTTAGAGGGCTAGTACTGGTCACCAAACATGCCAAAGTCACATTTCACCCcagaatgaaaagaaatatgTGCTGTATTTCAAAGttgttaaaaaactattttaaaataactataatatatatctgTGATACACGCTGAAATTTCTTTTGTATCCAAggatccttcaggaatcattcaAATACACGGATTAGCTGGTTAAgaaatttttcttattatttctgAATTACATTACACTGgtgaatatttttgttgtacAACATTTAACAGCacattgaatgcatttttttcacgctaaatatatttagttctttttttcttttgattttggggtgaaatatgacctgaacaTTATTCTGGAAATTCACTCGCtgcggcttttttttttctttatacttTACATTATGAGGGCGTCTTTGGTGTCCTCTTTTGAATAAATTGTCAGACAAAgggacagttttttttctcatttgagCGGTCAGGAAGACCAGCTGTTCATTCACAGATTCTGCGATCAGATGTTAcctcattaatattaaagagCATCGCTCTAGGATTTCAAATGAAGACTCCCTCTTAAGAGAGGAGCATTAaatatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcggatGTTAATTACGTTTGTTCTGAATGCACGTATTTGTGGTGTGAAAGTTCAATCTGTGTAATGTGATTATGGAATGCGACgtgtaaatatgttttcataCAAATACTTTTGATACacctttgtaaaaatgtatataagatTTTAGATAACAGTATTGcctatgaattaatttatttggaatataCGATCATTGTTTTCTGatggtaaaataatatattctgCCAAAGTGTTTCTGTGCTGTCGGTAcgtatctttcttttttgctgttggtatttttttactgttcaaaTTGATTtcaatctttatttttacattttaaggctttaatatagaatattttgagtattttaattaaattacattgttATTGCACTATATTTTGCAAACACacaacttgtttttttcttttgtgtgccTTGTTTAGTGATTTTGACCAACACTGGTTTCATTCTGTCTGATCTCTGACTGCATAAACTTTATTGTGGCATAATGGTCTCattgtatttcaaatgtttctcTTTATATGTCTCTCtataaattgatataaaaatgaattaaaaatctgCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13006 lncRNA upstream 27945 2053311 ~ 2055730 (+) True G8670
XR_006252239.1 lncRNA upstream 135313 1947128 ~ 1948362 (+) True LOC122355709
TU12886 lncRNA upstream 146916 1935914 ~ 1936759 (+) False arl14
XR_006253155.1 lncRNA upstream 154108 1925860 ~ 1929567 (+) True LOC122362698
TU12891 lncRNA upstream 161452 1919412 ~ 1922223 (+) True G8586
TU13034 lncRNA downstream 14357 2170596 ~ 2170820 (+) True G8691
TU13035 lncRNA downstream 31118 2187357 ~ 2191448 (+) False LOC122358138
TU13045 lncRNA downstream 55514 2211753 ~ 2212073 (+) True G8700
TU13046 lncRNA downstream 56019 2212258 ~ 2212609 (+) True G8701
TU13053 lncRNA downstream 65469 2221708 ~ 2222074 (+) True G8706
XM_043253397.1 mRNA upstream 7638 2072770 ~ 2076037 (+) True ebna1bp2
XM_043257124.1 mRNA upstream 31549 2038907 ~ 2052126 (+) True LOC122357653
XM_043257132.1 mRNA upstream 31549 2038921 ~ 2052126 (+) False LOC122357653
XM_043257119.1 mRNA upstream 31549 2043768 ~ 2052126 (+) False LOC122357653
XM_043257091.1 mRNA upstream 66644 2005196 ~ 2017031 (+) True scp2a
XM_043257941.1 mRNA downstream 17133 2173372 ~ 2178165 (+) True LOC122358154
XM_043257930.1 mRNA downstream 22527 2178766 ~ 2187665 (+) False LOC122358138
XM_043257951.1 mRNA downstream 48955 2205194 ~ 2209223 (+) True LOC122358163
XM_043257912.1 mRNA downstream 56864 2213103 ~ 2265525 (+) True pde4bb
XM_043257920.1 mRNA downstream 75760 2231999 ~ 2265525 (+) False pde4bb
XR_006252350.1 other upstream 529561 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1255466 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1633656 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1633656 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1860632 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 22527 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 22527 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 114442 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 242715 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 254926 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile