RNA id: XM_043222200.1


Basic Information

Item Value
RNA id XM_043222200.1
length 4023
RNA type mRNA
GC content 0.48
exon number 27
gene id dpp6b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2955709 ~ 3064602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCAGGAAACCATGCTCTCAGCGCGCGCTGTCACAACTCCCGCAGGTACGTCACACTCGCCGCGCGCGCGGTCGCGTTAGAGGGTCATTCCCGCCGGCGGGAAACTGCGTCGGACGTTGACGTTGATTTTTACCTCAGAAAACAAAGCGGGGACACACCTACTCACTTCACCAGTACGACCTGATAAACATTTCGTTCAACTTCCGCGCAGACTTCTGACACACTGTTGAGGGATGAACTCGTCTGCTGGAGTAGGGAATTACCGGAGGGGGTCAACCAAAGATGATAAGgAGCTGGTTGGCAGTAGCCCTCCACAGAGGAACTGGAAGGGAATCGCCATCGCCCTGCTGGTCATCCTGGTCATCTGCTCTCTGATCGTCACCTCCGTCATTCTGCTCACACCGACTGAGGATGACAGTCTGGCCTCCAAGAAGAAAGTCACGATTGAGGACATCTTCAGCGGGAAGCTCCAGGCACACGACCCTAAGGCTGCATGGATTAGCGACACCGAGCTGCTGTACACTACCAACGACAGCAATGTGGTGAGACACAACGTCCTGACCAATACCTCCAAGATTTTGGTGAAGAACACGACGTTCGAGAGTTTCAAAAACCAGGGATCCTACAGACCGATCACATACAGAGTGTCTCCTGATCTGAAATACGTGCTGGTGGCCTACAATATCGTGCCGCTTTATCAGTATTCCTTCACGGCCTATTACATCATCTGCAGCCTCGACTCTCCAGAGAAAGTAGAGCTGACCCCTAATGAGGTGCAGAACACCGCACTGCAGTACGCCGGCTGGGGTCCCAAAGGACAGCAACTGATTTTCATATTTGAGAATAACATCTACTACAAAGCGCAAGTGAACAGCCCATCCATCCGGCTGGTGTCCACGGGCAGTCTGGGGGTCGTATTTAATGGACATGCTGACTGGCTCTATGAAGAGGAGATCTTCCAGGGTCAGATCGCTCACTGGTGGTCACCAGATGGTCTCAGACTGGCGTATGCCACCATCAACGACACTCTGGTGCCCAAGATGGAGATACCCATATTCACAAACGCACTGTATCCCAGCGGACAGGAGTACCGCTACCCTAAAGCAGGGGAGGAGAACCCTGATATCTATTTGTCAGTGGTGAGTCTGAACGGCCCTTTACACACAGTGAGGATGAGGAAACCTGAGGACCCCAGAATCAGGAAAGATTACTACATCACGATGGTGAAGTGGGCCACCAGCACCAAACTAGCGGTAAACTGGCTGAACAGAGCGCAGAACAACTCCATCCTGACCCTGTGTGAGGCCACCACGGGCATCTGCACAAAGAAACACGAAGACGAGAGTGACAGCTGGCTTCACAGACAGAACGAACCCCCGCTGTTCTCCAGAGACGGGTACAGGTTCTTCTTCACCCGCGCCGTTCCACAGGGAGGCCGAGGGAAGTTTTTCCACATATCCATGTCCACGTCCCAGCCCAACAGCAGCACAGACACGCTTCAGTCGCTGACGTCAGGAGACTGGGACGTGACGGAGATACTAGCCTACAACGAGAACACCAAGCTTGTATACTTCCTGAGTACAGAAGACGATGCAAGACGGCGTCACCTCTACAGcgcCAACACCACAGGATCCTTCAACCGCCGCTGTCTTTCCTGTAATTTAAGCTGTGGATACGTCAGTGGATCATTCAGTCCAGATGCTAACTACTTCCTTCTCAACTGCAAAGGTCCCGGTGTGCCTCACACAGCCGTGTACAGCACCAGAGACGGAGAGTACGAGAAGCTGCTGGATGTGGAGCTCAATGAGCAGTTGAACACCACCGTGAACAACACTCAGATGCCCAAAGTAGAGTACAGAAAGATCAACATAGAGGATTACTCTCTGAGCATGCAGATCCTGAAGCCAGCCGGGTTTCTAGAAACGTCTCACTACCCCTTACTGCTGCTGGTGGACAGCACCCCCGGTGGTCAGATGGTGACGGAGCGGTTTCAGGTGGACTGGACCACGGTGCTGGTCAGCTCCTTCAACACCATAGTCATGCGTCTGGACGGCCGCGGCAGTGGCTTTCAGGGCACAAACCTCCTCCACCGCATCAGGAAGAAACTGGGGGAGTTCGAGGAGAGAGACCAGCTGGAAGCTCTTAGAGAGATCTCACAGCAGCCGTTCATCGACAGCTCAAGAATCGGAGTTTATGGAAAGGCATATGGAGGATACCTGGCCAGCAGACTATTACGCTCAGATGAAAATCCAAATATGTTTAAGTTCAAAATCAAGTGTGGCACAGCCATCTCTCCCATCACTGATTTCTCTTTATACGCTTCCGCGTTTTCTGAACGCTATTTAGGATCACCGCAGGCCAGTAAGAGAGAATATGAGATGGCACGTTTAACAGAGCACTCGGAGCAACTGAGGGACAAGAAACTCTTGATAATTCACCCGACGGCTGACGAGAAAGTCCATTTTCAGCACACGGCCAAATTTATCACCCACCTGATAAATGAGAAAGCTAATTATACATTACAGATCTACCCAGATGAAGGCCACTTCCTCCACTTGAGAGAGTCTCAGCTACATCTGAGCCAGTCGCTGGTCAACTTCTTCGTGGAGTGTTTCAGACCCCCAGAGATACTGACCGAAGAGAAACTGGAGCCGGACAACGAGGACGATGGTTAAAATTCTGCTCGGATCCAGCACAAGACAGCTTACAGCCCAATATGCAAACTCCTCCTCCCCCCACCtcaccctcctcctcctcctcctcctcctccatccccaTGGTAGTTCTGATGGCTTCTCCTGAGCCTCTGCATGGACCACGCCCCTCAACTCTGATTGGTTCATTGGCTCCAGGAAAGAATCCTGAATGACTTGGTGATACTCAAGAAGCAGTGGAGGCACTCTCCCACCGCCACACGAGCAGCGACGTGCGCGATTCGGTCAGAACTCTTTGGCTTGTGTTCTGTAATTCACGCATTGCCGAGGAAAGCTTTAAGAGATGATAGCACAATATACAGCAGAACGATTGGCCGGTATTAAAAGCTGCAGATTTACACGAAAGAATCATTTTCCCTGCTGCGTAACATTCTGATGAGTTCAGGACAGCTCCTTTGTTTGGGTATAAATGTTCTTGTGAACTCATTTGTTTCTGTCGTCAATGTCATCGTAATTCATGCTGAATGAATTagcacaaaatatttataaaaccatCTCACGTGTCAGTTGAATGTGgtaatttacatgaaaaaactTGTGCATAAATCgtatacataaaatgtttatacgGGAATTAGTTCTGTGCATTTCATGAGGCTATTTTTTCATCAAACGTGCAAACGGTTGCATTAAATTTCAATTGTTGTAAGTATCCATATCAGCATGTCGGCACAATGGCATATTGTTCATTTGTGAATCGGCCCATTCTGAAAAAGGACAGTCTTgattatttcttcttctttttttatgtgagtGCAGCTGCAAACGTCTGGATATTCGTTTAGTCACTGTGCCTTATTGGAGTATACCTGCTAAAGACAGGCAGTCCATGAGGTAGGACGAATAATttatgggggggaaaaaaagaaaaataaagttttacgtTATCAAAGAGAACCACGCCACAATCCTGCCAAGAATCTTTAAAGTCCTGTGTACTGGTTGAGTTGTGAAGTAATCCAGTAGGTTGACTGAATACACAATTCATAGGACTAGCGTCTTCGGGCAGGTCTGCGTTTTATTTGGGGTTTTCCGTCGTGTGTGGTTACAAAGATCTTTGAAGAACGTTTTGCatagaatatattttcttgCTCTATAATTTGGCATGGTGGCAAGAtggtttcttttgttttaatgtatcgATTTACGTGTCGTTACTTTTGACAGCTTGAATGTTCCTATGTGGTTCCACTCAATTTATTGTTGTAAGTGAAATCCTGTCTTGTAAGCAGATGCACTGATGTGTAAATTACAACTGTTTTGGTCCCTACTTGTGTGTACCTTGTACATAAAGCATTTTGAAAGCTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13209 lncRNA upstream 42922 2912291 ~ 2912787 (+) True G8816
TU13183 lncRNA upstream 82960 2819072 ~ 2872749 (+) False G8794
TU13185 lncRNA upstream 94603 2819072 ~ 2861106 (+) True G8794
TU13184 lncRNA upstream 99300 2819072 ~ 2856409 (+) False G8794
TU13130 lncRNA upstream 285766 2638542 ~ 2669943 (+) False LOC122355548
TU13511 lncRNA downstream 52246 3116848 ~ 3121053 (+) True G9022
TU13515 lncRNA downstream 91998 3156600 ~ 3164823 (+) False gpr158b
TU13665 lncRNA downstream 458668 3523270 ~ 3524571 (+) True G9130
TU13692 lncRNA downstream 499106 3563708 ~ 3564239 (+) True G9141
TU13693 lncRNA downstream 507835 3572437 ~ 3573075 (+) True G9142
XM_043260587.1 mRNA upstream 175031 2742715 ~ 2780678 (+) True bcl2b
XM_043256623.1 mRNA upstream 215802 2729636 ~ 2739907 (+) True kdsr
XM_043256604.1 mRNA upstream 226216 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA upstream 226216 2722211 ~ 2729493 (+) False vps4b
XM_043217897.1 mRNA upstream 253737 2695421 ~ 2701972 (+) True LOC122323799
XM_043261211.1 mRNA downstream 58522 3123124 ~ 3163198 (+) True gpr158b
XM_043254300.1 mRNA downstream 105849 3170451 ~ 3190588 (+) True kcnt2
XM_043254309.1 mRNA downstream 129410 3194012 ~ 3197447 (+) True LOC122355741
XM_043263882.1 mRNA downstream 144550 3209152 ~ 3213666 (+) True LOC122362414
XM_043217297.1 mRNA downstream 170632 3235234 ~ 3253124 (+) True abhd3
XR_006252450.1 other upstream 215802 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 266082 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 319123 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 319123 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 337260 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 550880 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 611823 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1157637 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1499295 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1514672 4579274 ~ 4588478 (+) True mylk4a

Expression Profile