RNA id: XM_043223961.1


Basic Information

Item Value
RNA id XM_043223961.1
length 2706
RNA type mRNA
GC content 0.56
exon number 2
gene id foxf2a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4888123 ~ 4891761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGATGATAGGGGTCCGGGACGGTAAACCGACACTGCGCTGTGTGTGGTATCCGAGCCCTGGCGCAGCGGCTGATGGAAAAAGCCTGCTTCCACTCATGTCAAAATCATTTATCCAGAACAGCCCTTTACAAGAACTTGTATACACTCGGAGACGGGCTTTTTTTTCTCGCCCACCCCCATCACGCGCGCTCGACGAGATGCGCGCGCGGGTCACCGCCTTACGGGCTCGCGCTCTTCGCTCTTAGGCGAGGAGATGGACTCGTTCCCTCGACGGCCGAGCGCGCCATTACACCGTGCCACTCACTAGAAGTGCTTTTCAGCTTCGACCTCCCGTCCTCCAGCGCCAGAACTCTCACCAAAGCACGCCATTAATTACTGGAGCCCTGACAGCCTTCGCCCCGGTGTTTGGCGTGTGGCGCTGTTGATTGAAACGTCGGACTAGGCTTGATAAATGGCGTTATTGCGTGTATTTAGGCTGTCAGAGGGGAGGTGGGGAGTCTCTCTGCTCGGACTCTGCACAGCCTCCTGCCAGACCGATAGCTGGAGGCATGCCAGACATGGAAAAGGGGTGGGTCTCCGCAGTTTGAGGAGATTTCTTGGAGGAATTTAGCGGGGATCTAGGGGCAGAGAGAGATTTACGAATTGATAGGTGGTCGCGTTTTGTTTGGCCGCACGTCTTTGCGCCAGAGGACTCTGGAGCATTGAGTTTCCTTCTCTTAAAGGATTAGTCTTCGCGATGGCCACCAAGAGACTAAGGAGGGGTCGCTATCCTGGCGACACACAGCTGGTGGCTTCAACCGGGAGCACAATTGTGGCGCACTGACCTCGGACAGACGCTGGCTTTTAGCAGAGATTTGCTCGGAGTACGCGCGGTTTCCTCCCGTATTTTTAGCCCCAGACTCTTACTCCCTGAAGACCGAACCCGTCTTTTAACGTCCGTCCAGCTTCCTCCGCGATGACGACCGAGAGCTCCCAGCAGCCGCTGGACACGCCGGCTCCCATCAGGTCCAGCCCCGCGTCCAGCGCCATGCACTCGGCGCTTCAGAGCACGCAGACGGCGCTGGAGAGCACGGCCGCCACCGGCAGCAAGGGCAAGAAGTCCAACTCGGGCATGAGGCGCCCCGAAAAGCCCCCGTACTCGTACATCGCCCTCATAGTCATGGCGATACAGAGCTCTCCGACCAAAAGGTTAACGCTGAGCGAGATCTATCAGTTCCTCCAGGCGCGCTTCCCGTTTTTTCGGGGCTCCTACCAGGGCTGGAAAAACTCGGTCAGACACAATTTGTCTCTTAACGAGTGCTTCATCAAGCTCCCCAAAGGCCTCGGGCGGCCGGGGAAAGGCCACTACTGGACCATCGACCCCGGCAGCGAGTTCATGTTCGAGGAGGGCTCCTTCCGACGCAGGCCCCGGGGTTTCCGAAGGAAATGCCAGGCGCTCAAACCCATGTACCGCATGATGAACGGCATCGGCTTCGGCGCCTCCATGCTGCCCCAGAACTTCGACTTCCAGTCGCCCTCCGCGTCCCTGGCCTGCCACGCCAACGGCTACAACCTGGACATGATGAGCAACCCGGTGCCCGGCGTCCACGCGGGATACGACAGCCTCGGCACGGGCCACCACGTCTCCCACATGTCGCCCAGCTCGGGCTCCACGTACATGACGGCGTGCCAGGTCGCTTCCAACGGCGAGTACGGCCCGGAAAACAGCAACAGCCCGCTGCACTCTCCCCCGAGCGGCATGAGCGGCTCCCTGGAGTGCCACTCTCCGTACGGGGCCGCCTCGGCGCACTGGGCTTCTTCAGGCGTGTCTCCTTACATTAAACAGCAGCCGCTGGCCTCCAGCAGCCCGAACTCCTCTGGACTACACTCGAGCATGCCTCCTTACTCTCTGGAGCAGGGCTACCTGCATCACAACGGCAGAGAATCGGCGGACATCTCAGCAGGAATGTCTCGATACCAGAGCCACTCATCGCCGGTCTGCGACAGAAAAGACTTTGTGCTGAACTTCAACGGCATCACGTCGTTTCACCCGTCCGGCAGCGGGTCCTACTACCaccaccagctccatcaccaaggaGTCTGCCAAGACGTGAAGCCCTGCGTGATGTAACCGAACTCTGAGcggccaaaataaaaataatacacccGAGAGTACGGAGCGAACTCTGAAGTCCCGAAGAACGCGTGAAACGAGCGGAAGTCGATCTGAGAAActacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagtcgAGTGACCGCAGCAGAGGAAAGCGTTCGGGCTTCTgcttcttttcttgtttttgttttctttggaaaGATTATGACGTATATTTACtatctgggaaaaaaaaaaaaacctcgaAATGTCCGCGACGTTGTTTTAATCCAAGCCGTTTATCGAGTCCGCGAGCGTTTGGTTCGAGCGCGTttccaaagagagagagaggatacTACGGGAAAGCGCTCAGAAGCCGAGGATCAGGACACAGCCCGTGCATGTCGATCAAAGAAGTATCTCGTTTGTCTAaaccttctgtgtgtgtgtttctgacgGCTCTTATATCTTCAGGGGTCAATGGGGCCTACGAAAACCGTATTAGAATAATAATGATTGCACTTTTGTTAGTTTAAAAAGTTGACAAATTACAGTTATGTACAGTACAATAAAACTATgtattctcaaaaaaaaaa

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14252 lncRNA upstream 100754 4787046 ~ 4787369 (+) True G9550
TU14236 lncRNA upstream 233953 4653956 ~ 4654170 (+) True G9536
TU14214 lncRNA upstream 260953 4624762 ~ 4627170 (+) True G9516
TU14080 lncRNA upstream 318029 4568633 ~ 4570094 (+) True G9416
TU14060 lncRNA upstream 405499 4479477 ~ 4482624 (+) True G9398
TU14285 lncRNA downstream 21234 4912995 ~ 4913362 (+) True G9568
TU14327 lncRNA downstream 183088 5074849 ~ 5111570 (+) True G9596
TU14347 lncRNA downstream 551773 5443534 ~ 5537078 (+) False G9613
TU14350 lncRNA downstream 551773 5443534 ~ 5537567 (+) True G9613
TU14345 lncRNA downstream 551847 5443608 ~ 5537078 (+) False G9613
XM_043223980.1 mRNA upstream 2158 4884610 ~ 4885965 (+) True LOC122328338
XM_043217242.1 mRNA upstream 298296 4572945 ~ 4589827 (+) False mylk4a
XM_043217223.1 mRNA upstream 298296 4580485 ~ 4589827 (+) False mylk4a
XM_043217230.1 mRNA upstream 298296 4580487 ~ 4589827 (+) False mylk4a
XM_043264143.1 mRNA upstream 338520 4540052 ~ 4549603 (+) True si:ch211-241e1.3
XM_043261999.1 mRNA downstream 6611 4898372 ~ 4899380 (+) True LOC122361055
XM_043254486.1 mRNA downstream 17372 4909133 ~ 4911176 (+) True LOC122355892
XM_043223281.1 mRNA downstream 838844 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA downstream 838844 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA downstream 838845 5730606 ~ 5763859 (+) True pex5lb
XR_006247003.1 other upstream 299645 4579274 ~ 4588478 (+) True mylk4a
TU14081 other upstream 318029 4563897 ~ 4570094 (+) False G9416
TU14011 other upstream 665011 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 1209189 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 1271080 3615482 ~ 3617043 (+) True G9154
TU14280 other downstream 6637 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 17368 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 17375 4909136 ~ 4909798 (+) False LOC122355892
TU14373 other downstream 716566 5608327 ~ 5609276 (+) True G9630
TU14467 other downstream 932232 5823993 ~ 5826286 (+) False dusp28

Expression Profile