RNA id: XM_043224252.1


Basic Information

Item Value
RNA id XM_043224252.1
length 3861
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC122328513
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2644995 ~ 2657785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgggtaatgtaGTTGATGAATAACGCTGAAGCGTGTGTTCTAAGTACGCAACTTTTacagtattaatttttttcctcaaacagACACAATATTTGTTCCATCTGTAGCAGCAGCCTCGGGGGTCCGCAGTGAAGAGAACATCGATGGATGCGATACGAACCCGTGCATGAACGGCGGCGCGTGCGAGAACCAGGACGGACAATACAAATGTCACTGCTCCCAAACGAGCTACAACGGACAGCTCTACGGAGGGCCGTCCTGCTCGGTGGCGCTCCTGGGCTGTGAACGCCACTGGTGCCAGAACGGTGCCGCTTGCTCTCCGTACCTGGACGAAGGACGGCATCGATACAGCTGCGTCTGCCCCGAGGGCTTCACCGGAACGAAATGCCAGACGTCCACCGCCTTCTCTTTCGAAGAGAGAGGATTCGTGCAGGTCCAAACCAACCTCACCGATGCTCTGGACCCTTTGAACGTCACGCTGAGCTTCCGCACGCTGCAGGCGGCCGCCGTTCTGCTCCAGTGCCGAGTCGAAGATCAGCTTCTCACGCTGGAGTTAGCGGACGGAAGGCTGCGCCATTCGTCTCAGAGAGCGACGCAAGCTGAAAGCGTTCTTGTAGAGCTCCCGCCGATCGTTTCTGACGGCCTTTGGCACACGGTCAAGGCCTGGCTGGGCAACAACATGCTCGGGCTGAGTCTTACAGACCCGTCTTGCCCGCAGGACACGTGTCACGCGGAAGTACAGATCGAACAAGCGGAGGCCGAACTGGGTTCAGGTCTGTCTGAGCTGGCTGCGATCCAGGATCTCTACATAGGTGGAAGAGGAGAGCAAGAGTCCGCCTCGGGCTTTTTGGGGTGTATGAGGGACGTGTGGGTGCATTCACGCATGGTGGTGCCCGGATTGGGGCTGAGGACTCCCGCTACGCAATTTAATGTGAAACAGGGCTGCAGTGACTGGGACCGCTGCAAGGAAAACCCGTGCCAGAACAGAGGCAGATGTGTCAAGTCTGGATGGAGGAGCTTCAGCTGCGAATGCCATCGGCCTTATGAGGGCGAGCACTGTTTAGATGAGTACGTGACCGCTCGCTTTGGGAGTGAAGATGTGGAGAGCTTGGCTGTGTTCTCGGTGGAAGACAGTCCAGGCGACACCAACACCGTGTCCATGTTCGTCCGCACGCGCCGCTCACGGGGCTCGCTCCTGGTCCTCTCCAACTCCACCAGTCACTATCTGCGTGTGTGGTTAGAGGATGGGAAGGTCAAAGTTCAGATCAACAACTTTGAAAGCCTTGCAGGCGGTGAAACGGTGAGCGACGGTCACTTCCACCTGGTAACAGTCGTCGTGGAGCCGGGATCTCTGTCCCTCTTCGTGTCAGCTAAGAGCCAGGGCCGCGTCCCCGTCCGCCGCGTGCTGGTCCAGGCTGGAGATGTGGTGTATGTGGGGGGTTTACCCGATCGCCGCGCGTCGCTGGCCTTCGGCGGATACTTTAAAGGCTGCATCCAAGACCTCCGTGTGAACAACAGACGCCTGCAGTTCTTTCCCATCGGCGTCCCGGTGAGCTCCTACCGGCTCCAGAGCTCAACCAAAGTCAGCCGCGGATGCACGGGCGACGACTCCTGCAGCAGTAATCCCTGCTTGAATGGAGGAGTGTGTTACTCCATGTGGGACGATTTCACGTGCAGCTGCCCACCCAATACAGCGGGACAGCGCTGCGAGGAGGTCAGGTGGTGTGAGCTGTCCCCGTGTCCGTCCGCTGCAGCCTGTCAGGCCCACGCTCAGGGCTTCGAATGTTTGGTCAATGTCAGCCTTCGGAGCGACAGTCACATTATCACATATCGCAGCAATGGAAAAATACGCCGATACCTCAGCAGCATTTCAATGCATTTCCGTACCAGGCAGCAGAATGCGACTCTACTGCATGCTGAGCGCGATTCTCAGTTCATTACCATTTCCATCCACGATGGGCGCATAGTTCTAGAGCTGCAGGGAGAAAAACAAACctcttatgtatatatacacagccTGGACCTGGTGAATGATGGTCACTGGCACAGGGCAGACTTCAGCATGGCCAGCCCGGTCCTCCAGTCGTCCAGATGGAGAATAGTTCTGGATGAGCACTGGGAGAAACCGTCCATCTCCTTCACAGCCTCGGGAGACCTGGATTTCCTCAGAGAAGATGTGGACATCATCTTAGGAGGCTTGGGGCCTGATTCAGAGGGAAACTTCGCTGGCTGTCTCGGCTCGGTGGAGATCGGAGGCCTTGCGTTGCCGTATTACAGCGACATGGAGATGAACCAGCCCAGACCCCAGGAAGAGCAGTTTCTGAGGACTTCTGGGACTCCCTACTTCGGCTGCTGGGGATCGAATGTCTGTGAGCCTGACCCTTGCAAGAACGGAGGGGATTGTGAAGATCTGTTCGACCTTTTCAAGTGTCATTGCCCATCGCATTGGGCTGGCCGGCGTTGTGAAGTCACTGTAGATGACTGTTCCTCAAACCCATGTGTTCACGGAGCCTGCAGAGCGATCTCAGCTGGATACGAGTGCTTCTGTGATGCAGGCTTCACCGGCCGGCGCTGCGAAACAGAGGTGGATGTATGCGCACACCACAAGTGCAGCAATGGTGGAACGTGCCTGAGAGGATTGAAACGCTACTCATGTCTCTGTCCAAGAAACACAACGGGTCCTTTCTGCAGggagagagtTCCAGAACTTCCATGGTATATCGACAGGTTTCCaTTCCCTAAACTCCCTGTGTCTTTCTGCGGGAATGAGAGATGGAACTACAGTTGTTTCAATGGTGGCAATTGCTCTTCTGTAGAAGATAACTGCGACTGTCTTCCAGGATTCGCAGGACAGTGgtgCGAGCTGGAGCTAGATGAATGCGCATCTGACCCCTGCCTTAACGGAGGCTTCTGCCGTAACCTGATCAACAGGTTCCAGTGTGTGTGCGAGATGAGCTTCGCAGGCGATCACTGTCAGATCGACGTCAGCGACTTCTACGTCTACGTCTTCCTGCTCCTGTGGCAGAACATCTTCCAGCTGTTGTCGTACCTCATTTTGCGTTTAGACGACGATCCGGAGATTGAGTGGAACGCAGCCAATGATGACTAGGACTAAAAAAGCCTTCCTTCTCAGACGCCCCGAGGAAGACGCGGGCTGATGTCGAAAGGACACAATAGGCAAAGGACTTTAGATATTATTAAAAGGTCATTATGGGATGGCGCAATTTTTGGACAAAATCTCGTTCAGGAAACATTCAATGAGAAAACCAATATGAGATCGGTTGTTTGCTAACGGAGCACTGTAACAGCTTCTGAACAATAattcattttagaataatactgatataaaaatctGCACATATTGACAGTGAAAGGCTTTACGTGTGCCTTCCTTTTTCTCATTAATGtctatttttgaaaacattgtcAAAATGTTTCTCATAACTTCTCAAAGTAATATGTATGAAGGCCAATGTTATAACAGACTGTCATATTCTAACGGTAAGAAAAGCAGCTTAATATGCATGTGATGTCACATcattattactttcttttttctgtcaatatttaATCCTGGACTTTTATACCTCAGCGATCGAGTGACTGCCCcgcttttcattattttcaaacCCGCATTGCAGATTTCTTTTGCAAATCTTTAAACCGTTCACCAAAATTAGAGCActgaaacaaatatatttttaaataaatatttttgaagcaaaaatacgatgatatatttttgtatcCAGCATCTGTGTATATTATAGTTTGTTTCAAACTGAACGAACGAAACCTAAATGAATTTTGTCTTGCTGCTGAGATGCGGAATATCACGGAAATAAAGTTATTAAGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13127 lncRNA upstream 25638 2617268 ~ 2619357 (+) False LOC122355548
XR_006252229.1 lncRNA upstream 26117 2617207 ~ 2618878 (+) False LOC122355548
TU13145 lncRNA upstream 31891 2612522 ~ 2613104 (+) True G8764
TU13085 lncRNA upstream 35476 2511622 ~ 2609519 (+) True G8724
TU13102 lncRNA upstream 199795 2443588 ~ 2445200 (+) True G8737
TU13183 lncRNA downstream 161287 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 161287 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 161287 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 254506 2912291 ~ 2912787 (+) True G8816
TU13511 lncRNA downstream 459063 3116848 ~ 3121053 (+) True G9022
XM_043220789.1 mRNA upstream 12439 2620842 ~ 2632556 (+) True dvl3a
XM_043253930.1 mRNA upstream 38139 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA upstream 38139 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA upstream 38139 2598778 ~ 2606856 (+) False ap2m1a
XM_043254707.1 mRNA upstream 63730 2563177 ~ 2581265 (+) False abi1b
XM_043218780.1 mRNA downstream 618 2658403 ~ 2661029 (+) True ahsg2
XM_043255474.1 mRNA downstream 17585 2675370 ~ 2689627 (+) True LOC122356587
XM_043255488.1 mRNA downstream 17587 2675372 ~ 2689627 (+) False LOC122356587
XM_043217897.1 mRNA downstream 37636 2695421 ~ 2701972 (+) True LOC122323799
XM_043256604.1 mRNA downstream 59788 2717573 ~ 2729493 (+) True vps4b
TU13150 other upstream 8409 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 8409 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 26546 2618316 ~ 2618449 (+) True LOC122329004
XR_006247876.1 other upstream 26861 2618002 ~ 2618134 (+) True LOC122328998
TU13140 other upstream 52237 2591634 ~ 2592758 (+) True G8760
XR_006252354.1 other downstream 17585 2675370 ~ 2689627 (+) False LOC122356587
XR_006252450.1 other downstream 71851 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 957697 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 1018640 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1564454 4222239 ~ 4223112 (+) True G9361

Expression Profile