RNA id: XM_043224477.1


Basic Information

Item Value
RNA id XM_043224477.1
length 1509
RNA type mRNA
GC content 0.44
exon number 6
gene id vcam1a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1570281 ~ 1575411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaaaagaaagtgaaaaggAATAGGCGGGATGGCTGATCGGTATCTTGGTTGGAAAAAAGCCGTGGTGGGAATATCCAACATCGTCCACCGTGTTATTTCTCAATTTGTGTGCTGAATGAGTGAAACACGACGGCGGAAAAATGCGTGGAGTGAAATGCATCAGTTTTGCGCTGTGGATTAATATTCTCAGCGTGATGACAGcaGAAAATGATTTCAGTCTGGAATTAACTCCATCAAATCCTGTGATTCATGTTGGTGAGGATTTGGAGCTGACCTGTCGAGTGAGCGGTTGTCCGTTTAATGTGACCTTCATCTGGAAAGCAACACTGGATGAATTTCTCGGTGGAGAGATTAAAAACGAGCAGAATGTTTCCCGTCTGCTGATCAGGAACATCTCTGTCAAACACAGTAATAAAGTTGTGTGCAAAGCTACTTGTCCGATGAAACCGTCAGGAAGAGAGAAAACggcaaatatacaaatgttcTCATTTCCAGAAGATCCCATAGTGCCCAAAATAAAGAGTTTGACAGCAAACCAAACCCAGAAGCTTACCTGCACAGTCCACAACATTTACCCTCCGGAAAGGTTTCAGGTTGAGTGGCTTCGAGGAAATACCGTCCTCCATAAGGACCGACTGCAAGTAGAACATTTAGACCACGTTCAGAATTATTCCTTTGTGTACAATTACACACCTTCTGTTGATGATCTGGGCAAGAATATCAGTTGCAAGGCAACAATGAATCTCAGCCTCGTCAAGCAAGAGAGAACAACAACTGCTGAATATGGTCCAGGGACTATAACAGTTTCCAGTAATAATGCTTTGGTAAAGATTGGCGAACCCTTGGAGATAGCATGTCACGCAGACGGAAACCCCAAACCAACAATCTCATGGTGGAAACTAGAGAATAAGCCTGAACTCCAGAGTCATAACCACACGCTGATCATAAACAATGCTTCCTGGTCTCAGGCTGGTTGGTATCAGTGTAATGCCAGCAATGGTGCGGGAAGCCAGCAAGCGAGAATAAAAGTCATCGTTGTAGgtCCTCCAAACATCCCTAGAATCCAGTTAAGCCATGAAGAGGAGCCTAAAGAAGGAGAGAGCATAAGCATATTCTGTTCTTCAGACGGCAGGCCAGCAAAACTCAAGCTTTACAGACAGTCCCAGACCATTGCAACAGGAGATCCCGACAAATCAGCTGTGCTTTTAAACATCACATCAGTCCAAACAACTGATGCAGGGATTTACATCTGTGAAGCAATAAATGAGTTTGGCTTTGAGAGGAGCACAATCAACATTACAGTCCAAGCACAAGAAGACATACGGAGCAAAGTGGACCTCCTGTGATCATACTGCCGACTATAGGGTCAGTGTCGCTGTTGACCGCTGCAGGACTGCTGATCAGACACTGCAGAAAGAAAGTCAAGAAAGACTCCAGTAACATCACACTCAACTAAACAGACTCaactttatatttctgaaatgtttctttataatctttattttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12804 lncRNA downstream 41864 1527191 ~ 1528417 (-) False colgalt2a
TU12723 lncRNA downstream 107767 1462060 ~ 1462514 (-) True G8489
TU12713 lncRNA downstream 170553 1399408 ~ 1399728 (-) True G8479
TU12669 lncRNA downstream 232896 1335923 ~ 1337385 (-) False mfsd8l2
TU12668 lncRNA downstream 237177 1332845 ~ 1333104 (-) True G8443
TU12914 lncRNA upstream 264761 1840172 ~ 1876938 (-) False G8599
TU12917 lncRNA upstream 298448 1873859 ~ 1876938 (-) True G8599
TU12913 lncRNA upstream 298598 1874009 ~ 1876938 (-) False G8599
TU12951 lncRNA upstream 346884 1922295 ~ 1940704 (-) True gng5
TU12947 lncRNA upstream 347873 1923284 ~ 1929991 (-) True G8623
XM_043255412.1 mRNA downstream 7668 1559777 ~ 1562613 (-) False zgc:110366
XM_043255403.1 mRNA downstream 7668 1559777 ~ 1562613 (-) True zgc:110366
XM_043219676.1 mRNA downstream 37724 1525748 ~ 1532557 (-) True colgalt2a
XM_043261685.1 mRNA downstream 55286 1476248 ~ 1514995 (-) True LOC122360826
XM_043261410.1 mRNA downstream 129518 1427876 ~ 1440763 (-) True ripk2
XM_043224455.1 mRNA upstream 140 1575551 ~ 1590010 (-) False cdc14aa
XM_043224440.1 mRNA upstream 140 1575551 ~ 1590010 (-) True cdc14aa
XM_043224449.1 mRNA upstream 140 1575551 ~ 1587281 (-) False cdc14aa
XM_043262098.1 mRNA upstream 23631 1599042 ~ 1616733 (-) True xpr1b
XM_043262105.1 mRNA upstream 25355 1600766 ~ 1616754 (-) False xpr1b
XR_006247870.1 other downstream 185115 1385097 ~ 1385166 (-) True LOC122328981
XR_006247864.1 other downstream 185406 1384697 ~ 1384875 (-) True LOC122328955
XR_006247866.1 other downstream 186006 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 186497 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 367294 1179945 ~ 1202987 (-) False dipk2aa
TU13282 other upstream 863950 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 864713 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 866773 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 901302 2476713 ~ 2502739 (-) True G8921
TU13373 other upstream 941368 2516779 ~ 2517260 (-) False LOC122358781

Expression Profile