RNA id: XM_043224735.1


Basic Information

Item Value
RNA id XM_043224735.1
length 1251
RNA type mRNA
GC content 0.44
exon number 10
gene id si:ch211-71m22.1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1062189 ~ 1067442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGTAAAAAGATACAGAAACAGGTTGTGCAGTCGTTCCAGAGGAACCAGTACCATTTGTCTCTGAGCGTAGTTTGCAGCTTTCCACCATGGCGACAAATAATGGTTACCCAATTGACCTCCAACCACAGAAAAATTCAATGAATCCCGCGCCTCCTTATAACCAGGGACCAGCCATGCCAGGCCAGGGTCAAGTTCCCGTGATGCCAGTTCCACAAAGACCCGCTGGCTGCCCTCCAGGACTGGAGTACCTGACCCAGATTGATCAACTTCTTGTACATCAGAAAGTTGAGCTGGCAGAAGTGATATTGGGCTGGGAGACCAATAATAAGTACACAGTGACGAACAGTATGGGGCAACAGGTGTTCTTTGTGGCTGAGGAGAACGACTGCTGTAATAGACAGTTCTGTGGGCCGCTGCGTTCGTTCGTCCTCCACGTTCAGGATAACATGGGACAGGAAGTGATGACACTCACTCGTCCTTTGAAGTGCGGAAGCTGCTGTTTTCCCTGCTGCCTGCAAGAGCTTGAAATCCAGTCTCCACCTGGCAACCCGATTGGATACGTGATCCAGAATTGGCATCCTTTCGTTCCCAAGTATACCGTCCAGAATGAGAAAAAGGAAGCCGTTCTGAAGATCGTGGGGCCGTTCTGTTCATGCAGATGTTGCGCTGATGTGAACTTTGATgttttGTCTGTGGACGAATCAACAAAGGTTGGCCGAATCGCTAAACAATGGACAGGTCTGGTGAGGGAAGCTTTCACCGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGACGTGAAGATCAAAGCTGCTCTTTTCGGAGCGTGTTTTCTTATAGACTTCATGTTCTtcgaacacaataaataatttattttctggaTGTCATTGTTTCAGCATTTCGAACGTATGAACTCCTCCTCAGCTCTCAACATGTTAACCGTGGATTCAAATGTGGATCACTCAgctaaattttatattatatcatacatATTATTATGTGCAGGTGTATTCTTTCACTACTGTTCCTGAGCCACCACTAGGTGACAGCAGTTCCCTTTATCATAATGTTGACATACTCTTTGTATTACCAAAGTACCTGCTCTAAAAGCTTCGCCAAAAACGAAATGCaaactattaaaattatttttttagtacaaTATAAGCAAAATGTTAACCGCTTAATTTTGCCCAATTTGTTTGTGTGCTTATAATAAACTGTAGAATAAAGTGTTATACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12330 lncRNA upstream 279444 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 377996 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 390626 668304 ~ 671563 (+) True G8173
XR_006247819.1 lncRNA upstream 417263 643034 ~ 644926 (+) True LOC122328698
XR_006247267.1 lncRNA upstream 427423 634151 ~ 634766 (+) True LOC122325219
TU12606 lncRNA downstream 112688 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 129985 1197427 ~ 1203014 (+) True G8393
TU12676 lncRNA downstream 314677 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 316450 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 339546 1406988 ~ 1408710 (+) False ccdc39
XM_043256987.1 mRNA upstream 915 1052080 ~ 1061274 (+) True LOC122357578
XM_043219803.1 mRNA upstream 22585 1035675 ~ 1039604 (+) True LOC122324991
XM_043256214.1 mRNA upstream 29200 1027293 ~ 1032989 (+) True LOC122357034
XM_043256101.1 mRNA upstream 37426 1019747 ~ 1024763 (+) True si:ch211-71m22.3
XM_043257400.1 mRNA upstream 55585 996929 ~ 1006604 (+) False miga1
XM_043218071.1 mRNA downstream 180776 1248218 ~ 1263078 (+) False pls1
XM_043218085.1 mRNA downstream 181588 1249030 ~ 1263078 (+) False pls1
XM_043218080.1 mRNA downstream 182149 1249591 ~ 1263078 (+) True pls1
XM_043219083.1 mRNA downstream 212395 1279837 ~ 1308819 (+) True ephb3a
XM_043219092.1 mRNA downstream 212395 1279837 ~ 1308819 (+) False ephb3a
TU12491 other upstream 233980 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 612170 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 612170 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 839146 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 477331 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1111324 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1111324 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1203239 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1331512 2398954 ~ 2401745 (+) True G8725

Expression Profile