RNA id: XM_043224778.1


Basic Information

Item Value
RNA id XM_043224778.1
length 1142
RNA type mRNA
GC content 0.46
exon number 10
gene id cope
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 693217 ~ 696664 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCCGTTCTGGTTTACGTGGCCAAAGTGACGTCGGCGAAGTTGACGTTTCGCGAACATGGCGTCGCAGCAGAGCGAGGTAGACGAGCTGTTCGACGTGAAAAACGCGTTTTATATCGGCAGCTACCAACACTGCATTAACGAAGCCCAAAAAGTAAAGACGTCAAATCCAGAAAAGGATATTGAGAAGAACATTTTTCTGTACAGAGCATATATCGCTCAGaGGAAGTATGGTGTGGTACTGGATGATATAAAGCCCAGCTCCTCCGAGGAACTGCAGGCTGTCAGGATGTTTGCAGAGTACATGTCCAATGAAGGCAAGAGGGATACAATAGTGACAGAACTGGACAAAAAGATGGCCAAGAGCGTTGATGTTTCCAACACCACCTTTCTGCTGATGGCGGCTTCCATCTACCTGCACGAGATGAACACGGATGCTGCGTTACGCACCTTGCACCAGGGGGATAGTCTGGAGTGCATGGCCATGACTGTTCAGATACTTCTAAAGCTGGACCGAGTTGATATGGCAagAAAGGAATTAAAGAAGATGCAAGACCAAGATGAAGATGCCACTCTGACCCAGCTTGCTACTGCTTGGGTCAACCTTGCAATTGGGGGAGAGAAATTGCAGGATGCGTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACACTGCTGCTCCTGAACGGTCAGGCTGCAAGTCACATGGCTCAGAATAAGTGGGATGAGGCTGAGTCGGTACTACAGGATGCTCTGGACAAAGACAGCAGCCACCCGGAGACACTCATCAACCTCATTGTGTTGACACAGCATTTGGGCAAACCTCCTGAGGTGACAAATCGATATTTGTCTCAACTGAAAGATGCACATAAGTCACATCCGTTTATTAAAGAATATCTCGCTAAGGAGAATGAATTTGACAGGCTTGCCATGCAGTACGCCCCCAGCGCCTGAAAGAACTACGCAGTTTTAATTTATGTCTCCGCACCGCAATATTATTTCTCCTCTATACACCTTTTTAATGCCTTTAAACAAAGTGATATTCAACAGGTtgagatttttgtttgcttctTTTTGAAGTCCAACAGCTCTACAAACATTCCCGTTTGATggttaaataaacatgtttatcatA

Function

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17268 COPE; coatomer subunit epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12329 lncRNA upstream 9024 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 21654 668304 ~ 671563 (+) True G8173
XR_006247819.1 lncRNA upstream 48291 643034 ~ 644926 (+) True LOC122328698
XR_006247267.1 lncRNA upstream 58451 634151 ~ 634766 (+) True LOC122325219
TU12316 lncRNA upstream 108869 583362 ~ 584348 (+) True G8213
TU12606 lncRNA downstream 483466 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 500763 1197427 ~ 1203014 (+) True G8393
TU12676 lncRNA downstream 685455 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 687228 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 710324 1406988 ~ 1408710 (+) False ccdc39
XM_043254347.1 mRNA upstream 379 685223 ~ 692838 (+) True slc25a24l
XM_043254375.1 mRNA upstream 25866 663791 ~ 667351 (+) True txndc12
XM_043222082.1 mRNA upstream 31217 658757 ~ 662000 (+) True zmp:0000001127
XM_043222089.1 mRNA upstream 31217 658757 ~ 662000 (+) False zmp:0000001127
XM_043254654.1 mRNA upstream 38436 648984 ~ 654781 (+) True zgc:153615
XM_043224288.1 mRNA downstream 9887 706551 ~ 776800 (+) True st6galnac3
XM_043224296.1 mRNA downstream 9887 706551 ~ 776800 (+) False st6galnac3
XM_043256339.1 mRNA downstream 103299 799963 ~ 828405 (+) True st6galnac5a
XM_043257429.1 mRNA downstream 179094 875758 ~ 952394 (+) False ak5
XM_043257420.1 mRNA downstream 179094 875758 ~ 952394 (+) False ak5
TU12282 other upstream 243198 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 243198 447162 ~ 450019 (+) False LOC122360757
TU12228 other upstream 470174 214409 ~ 223043 (+) False G8167
TU12491 other downstream 103268 799932 ~ 828209 (+) False st6galnac5a
XR_006252350.1 other downstream 848109 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1482102 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1482102 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1574017 2270681 ~ 2275135 (+) False sgip1b

Expression Profile