RNA id: XM_043253940.1


Basic Information

Item Value
RNA id XM_043253940.1
length 1643
RNA type mRNA
GC content 0.52
exon number 13
gene id ap2m1a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2598768 ~ 2606856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGCGCTGTGAAACCTGTCAGctgacttcctgtctgaggGAGGGACTGCTGCTAGCGTTCCGCTAATCCTTCAGATCCCGAAAAATACCACGGAGAGGGAAGGGAACTGTCCATTCCGCGCATATCCGTGCGGACACTAAGAGTGAGGTCCCGCCATGGAATGTGAGGTCTGAGGAGCAGCCACCATGATTGGAGGACTGTTCATTTACAACCATAAAGGGGAGGTGCTCATCTCCCGCGTCTACCGCGATGATATCGGaCGCAATGCCGTGGACGCGTTCCGCGTGAACGTGATCCACGCCCGTCAGCAGGTGCGCTCCCCCGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTATAAGATGTGCGACGTCATGACGGCTTACTTCGGGAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTGGATGagaTCCTGGACTTTGGATACCCTCAAAACTCTGAGACTGGAGCACTGAAGACTTTTATTACCCAGCAGGGCATCAAAGGACAGCATCAGACTAAGGAGGAGCAGTCTCAGATCACCAGTCAGGTGACCGGGCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAACGAGCTCTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTCATGTCTCCTCAGGGTCAGGTCCTGAGCGCTCACGTCTCCGGCCGCGTGGTGATGAAGAGCTATCTGAGCGGAATGCCCGAGTGCAAGTTCGGCATGAACGACAAAATCGTCATCGACAAACAGGGCAAAGGAGGAACCACCGATGATCCTGGGAAAAGTGAGTTAGGGGGAAGTGGCAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTCAGTAAGTTCGACTCTGAGCGCAGCATCAGTTTCATCCCTCCCGATGGGGAGTATGAGCTCATGAGGTACCGCACCACTAAGGACATAATCCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGCCGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAGCCTTCACTCCTGGCACAGAAAATAGAGGTGCGTATTCCTACGCCTCTGAACACTAGTGGAGTGCAGGTGATCTGTATGAAAGGAAAAGCTAAATACAAGGCCAGTGAGAATGCCATTGTCTGGAAGATCAAACGCATGGCAGGAATGAAGGAGTCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAACGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCGTTTGCACCCTCGGGGCTGAAGGTTCGTTACCTGAAGGTGTTCGAGTCGAAACTCAACTACAGTGACCACGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGGATCTACGAGACGCGCTGCTAATAAGCCGCTGAGCAGAGGGACCAGCTCTTACTCTCCTATAAATATACTATGTTTCCCTCCTTTTCCTCTCCTCGAGATTTGTGGATGAATTAAAAAGgctaattacaaaaaaaaatatgcaaaatgtgaA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA upstream 153578 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 277591 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 308738 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 310562 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 345187 2249222 ~ 2253591 (+) True G8703
TU13145 lncRNA downstream 5666 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 10351 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 10412 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 10412 2617268 ~ 2619357 (+) False LOC122355548
TU13130 lncRNA downstream 31686 2638542 ~ 2669943 (+) False LOC122355548
XM_043254691.1 mRNA upstream 17513 2563177 ~ 2581265 (+) True abi1b
XM_043220789.1 mRNA downstream 13986 2620842 ~ 2632556 (+) True dvl3a
XM_043224252.1 mRNA downstream 38139 2644995 ~ 2657785 (+) False LOC122328513
XM_043224241.1 mRNA downstream 38261 2645117 ~ 2657785 (+) True LOC122328513
XM_043218780.1 mRNA downstream 51547 2658403 ~ 2661029 (+) True ahsg2
XM_043255474.1 mRNA downstream 68514 2675370 ~ 2689627 (+) True LOC122356587
TU13140 other upstream 6020 2591634 ~ 2592758 (+) True G8760
TU13121 other upstream 43457 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 43457 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other upstream 43457 2549892 ~ 2555321 (+) True zgc:55943
XR_006252635.1 other upstream 178823 2411165 ~ 2419955 (+) False LOC122358652
TU13128 other downstream 10412 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other downstream 10412 2617268 ~ 2669943 (+) False LOC122355548
XR_006247876.1 other downstream 11146 2618002 ~ 2618134 (+) True LOC122328998
XR_006247877.1 other downstream 11460 2618316 ~ 2618449 (+) True LOC122329004
TU13150 other downstream 28385 2635241 ~ 2636586 (+) False G8768

Expression Profile