RNA id: XM_043254097.1


Basic Information

Item Value
RNA id XM_043254097.1
length 4617
RNA type mRNA
GC content 0.42
exon number 4
gene id wnt3a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3460727 ~ 3481179 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCGCGGTTCAGGCTGACTGGGTGACTCCATCATCTGAATTTGGCCTGTGGCAAGAGCCTGTGATTGGGTCCGGACGCGGAGCCGCTCTCTTTAACGTGCGCCTCGCGAGCGCGCGCGGGACAACGCCGTAGGATTATCGGAGAGAAATATCGCTCATCATCACCTTCGCGTTTTCTCATCGACACGCGCGGGCGAGAGCGTGTGCGTGCctgcgtgcgtgcgtgtatgtgcgcgcgtgtgtgtgcgagagtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgcgtgtccgtTTAAGcctaactttttttaaaggatgaTATACCTTGGATGTttcctgtttcttttttgtgGGCTCACGCGTGTCATGGGAAGTTACCCGATATGGTGGTCTCTGGCCGTGGGACACCAGTACACTTCACTGGGTACTCAGCCCATCCTGTGCAGCTCAATCCCCGGCCTGGTACCCAAACAGCTCCGCTTCTGCCGCAACTATGTGGAAATCATGCCTAGCGTGGCAGAGGGGGTGAAGATCGGCATCCAGGAGTGTCAGCATCAGTTCCGTGGACGCAGATGGAACTGTACCACTATTAATGACAACCTGGCCATCTTTGGACCGGTGCTGGATAAAGCCACTCGAGAATCAGCATTTGTCCATGCCATTGCTTCGGCGGGGGTAGCGTTCGCTGTGACGCGGGCTTGCTCTGAGGGCTCCGTCACCATCTGCGGCTGTGACACACGAAGGAAAGGACCGCCGGGCGAGGGCTGGAAGTGGGGTGGCTGCAGTGAGGATGTGGAGTTCGGCAGCATGGTATCCCGAGAGTTTGCAGATGCTCGTGAGAATCGTCCAGACGCTCGCTCGGCTATGAATCGACACAACAACGAAGCTGGGCGTGTGTCAATAACAGACCACATGTACCTGAAATGTAAGTGTCACGGCCTTTCGGGAAGCTGTGAGGTGAAAACCTGTTGGTGGTCGCAGCCTGACTTTCGGGTGATCGGCGACTACATGAAGGACAAGTATGACAGCGCATCAGAAATGGTGGTTGAGAAACATCGGGAATCACGAGGCTGGGTCGAAACCTTACGACCGAAGTACACCTTCTTCAAGCCCCCTACCGAAACTGACCTGGTCTACTACGAAAGTTCGCCTAACTTCTGCGAACCCAACCCGGAAACCGGCTCCTTCGGCACCCGTGACCGAATGTGTAATCTGACATCACACGGCATTGATGGCTGCGACTTGCTCTGTTGCGGTCGAGGCCACAACACTCGAACTGAGAAACGCAAGGAGAAATGCCACTGCATTTTTCACTGGTGCTGCTACGTGAGTTGCCAGGAGTGTACTCGAGTTTATGATGTCCACACTTGCAAGTAAGAAACCACCAAAACCAAAACCAGATTGGACCATATTTTTTAGGTTGTGAACACGCGAGAGCCTTCAGTCCGAAACTTGTGGAGTTGTTTGTGGTTTCACTAATAAGATAATCTCAAAAAAGAGATACAGTGAAGTAATTCTAGAACACCATCAAAGAAAGCTGTTTCaacagacacaaagaaaaaccCATAAGGGCTTTGTTCTCCATTGTTGAGGACAAATACAGGCTGGTGGCTCAGCTCTGGAAGGGACTTATCGTTTCCAGTCTGATACAGGAGGGGATAAGTGATGGATCAGATTACTACTGACTCGGGCCCTTGGGACCTTGACCAATTGTGTCTCcaagaaaagaacagaaacCTTTCAAAGGGAGAGGTTTTGTCGGCACGTGGCTGCAAACTCAGATGGGACAACTCTGTAACAACAAATGTAGCACAAACTGAATGCTAGAGTTTGCCCGCAAGCGCCTCTGAAATGTGGTGATAGTTGCATTATTAATGATAGCCTTACTACTAACACCATTAAAGAAGCTATTTGTATCTTTTTAATACAAAGTGCATTCCAACATTCCTAATCTCCAGCAAACAAACGATTAACCAGTTcttttataacataaaatacacTTCATGTTGTCTCTGAACCAAACACTGAACTTATGTATTAGGTTGAGTTTATTAAAAGTTACTAACATTAGGTTACGAATGCACTTGTATCTAAGGTGAATGTCCATGCGTTGTGTATATGTCACTGTTTTCTTGAAAAGTATCAAAACCTCTTCTAGATAATATAGTTTAGAGTGCTATTACACTTGGTTTGGTTGGTCCAGTTGACTCTCCTTTTCCCTGACCTTGCTGGGTTGTGTTCACACTGTGTTTTTGGATCTGAACCATGGTAAACTTGATAAGAGTTATGCAGGAGAAGCCTGCAAAATGCACCGACCTACTCAGTTTTATACTttgggtattttttttatcctggGCTTCTTTCCGAAGGGTCAACGGAGAATGGCACTTGCGCTTGTCTGTGCGAATGTATTGCAAAGGTTTCAAACAACATCTACTTGCTattggaaaaacaaacagccaATGCTGATGTTTCGAAGCATGGCTGcctatttaaaatgtccttAGCTGGTCATGAGCTGTTTTAAGCTGGTTCTTAGCTTGTCATGTGCTAGATTCTGCTCAGGACCAGCTCAGGACCGTCacatgaccagcttaaaccagtaCAAAACCAGCAtccatgctttaaaacataGGGATGTGTCCTGCTTGTCAGGAAAGTGAATGAACCGCTGATCTATGTTCGTTATTTTAGATCAGAgcacacacaagcacatcaTTTGACTTTGATGCCATCAACAGAGGTTTACTCAAGCGATTTAGGACGATTGCATTCATATCTGCAGTAAGTTTAAGTTGTGGACTTGTGTTCGATTGACTAGTACCCACCAGAATTCCAAAAAATGTGTTCACATCATCCAAACAAGCTGAAATCTGACTTCAAACTAACCCATTTGTGCAAGTGTGAAAGCACCCAGTTTTCCCCAAAGATCAATAATctattaaagctaaaataaatagatgtgaGCACTTCTATCTTGAAATATTCATTTGCCTTATTTGTGTGTGACAGTATTATTGATGTTCCACAAACAGAGAGGTCCACGACATTtcagaataaatataaaggtaACTGTACCTTTATTCAGTAGCTGAAACACTgttcatttgtaagtcactggataaaaaatactgctaaatcaataatataaatgtacatgcagGGTCCAAAATTAACACTCGCTAAGTGTCTCCTGTGCAAGTATATAattgttgaaaataattatcaagGCCACAGTATCATGACTGGTATATTTTCTCAACTCACCCACCTTTGACAgtatttttgttgatttttataaGGACCCTGATTATAGATTTTGTTTCTGCtatgacaaaatgaataatttagtttttgatCACACTCAAGTATTTTTCAAACTTGCCTTTAATAGCCAACATATGTGAATTCATGaccaaaattaatgtttttattattattattgttattctaACTTTCCCTAGCCGGTTGTACATGAAAGTTAGCAGCAGTGCAGAAACTAAATGAACTACCCTCATTTATAATGCTGCTAACTATTAACAGgtttgttgttatatttatgaGAGATATTGTGCTTGTGCatttgtgtttctctgtgtaaaTCTACTGTATGTGTCTTGGTGCTTGTATGTAAATGTGTCTGTATATGTGCATGactctttgttttcttctttctgtgaAAGACACTGTGTAAGCATAGTTAAGAACTAAAATGTGAAGTTTTCTACTAATGAAATCTTGATAGAGAGTGTGTTCGTTAACCAAATAGAGATATTCTAACACTTTTGTGAGTCCTTTTGAACAAtagattataaaatatgtaatgtatgaaaattaaaatgcatattgtgTTATTAAAAGCCACGctatattttgacaaaatagCATCAAAAACAGCTTTCTGAAGAAAATACGTACCATtgttatattacaatttaaaaaatatgtgtaaCTAGTAAACAGACAGGAGATTAACTATTAGTCGGCCTAATGTTGCAAGGAAATGTGAGAAGGCAGAGATAAAACCCCAGCTTGTAAAATTCTTTGGCAGAAGTTCTTTTCACAGATCTTTCCTCAAAGAAAATTAACTCAAGTTTCCTCTTGCCCATCTCACACTGATTTAATCTCTCATCAATCAGGGATCATTTCAAAGCACATGCCCTATTCAGCTTTCCACAAAGCTTTATTTAACATAATGATCCGCCCCTAACTACAAAATCAATACttcatgtttttatgtgtaCATCACTGCATCTAAATTTCGACTGTTTGCTTCCACGCAGTTCAATTTGTATTCTAAACATGGTCTTCAAATCCAAAGTTTTGTATGGACTAGTTCTGTGTTTAAGGATTTCTGGAAgttctggattttttttatgactatttattttactgtaatgtatATATTAGCAAGAGTATATATTTGCTGACAAAAGATTATTACTTGTGAggagtgttgttgttttgtgtaaCTGTTTTACCAGCAACCAGAATGTGTTGTTGCTTCTTTTTTCACTGACCACATAGGATGCACTGTATGTCCTGCTCTCTGTTATTAGAATTCTAGCTGTTAATGTTATaaccaaattaaataaaaaatacgcTTCTTTCGTTGA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0021794 thalamus development biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060026 convergent extension biological_process
GO:0030903 notochord development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13515 lncRNA upstream 295904 3156600 ~ 3164823 (+) False gpr158b
TU13511 lncRNA upstream 339674 3116848 ~ 3121053 (+) True G9022
TU13209 lncRNA upstream 547940 2912291 ~ 2912787 (+) True G8816
TU13185 lncRNA upstream 599621 2819072 ~ 2861106 (+) True G8794
TU13184 lncRNA upstream 604318 2819072 ~ 2856409 (+) False G8794
TU13665 lncRNA downstream 42091 3523270 ~ 3524571 (+) True G9130
TU13692 lncRNA downstream 82529 3563708 ~ 3564239 (+) True G9141
TU13693 lncRNA downstream 91258 3572437 ~ 3573075 (+) True G9142
TU13801 lncRNA downstream 299361 3780540 ~ 3780778 (+) True G9232
TU13803 lncRNA downstream 303160 3784339 ~ 3784667 (+) True G9234
XM_043263682.1 mRNA upstream 109143 3343658 ~ 3351584 (+) True snap47
XM_043263695.1 mRNA upstream 120753 3336399 ~ 3339974 (+) True iba57
XM_043218239.1 mRNA upstream 127722 3313001 ~ 3333005 (+) True gjc2
XM_043218248.1 mRNA upstream 127722 3326191 ~ 3333005 (+) False gjc2
XM_043218229.1 mRNA upstream 147876 3310936 ~ 3312851 (+) True LOC122324044
XM_043217511.1 mRNA downstream 18401 3499580 ~ 3504255 (+) False arf1
XM_043217502.1 mRNA downstream 18556 3499735 ~ 3504255 (+) True arf1
XM_043260808.1 mRNA downstream 31710 3512889 ~ 3522776 (+) False guk1a
XM_043260785.1 mRNA downstream 31714 3512893 ~ 3522776 (+) False guk1a
XM_043260765.1 mRNA downstream 33266 3514445 ~ 3522776 (+) False guk1a
XR_006252450.1 other upstream 720820 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 771100 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 824141 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 824141 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 842278 2618316 ~ 2618449 (+) True LOC122329004
TU13709 other downstream 134303 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 195246 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 741060 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1082718 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1098095 4579274 ~ 4588478 (+) True mylk4a

Expression Profile