RNA id: XM_043254448.1



Basic Information


Item Value
RNA id XM_043254448.1
length 830
RNA type mRNA
GC content 0.51
exon number 5
gene id wu:fc46h12
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1408869 ~ 1413253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGAACAGAAGGACACACATTTAGCGCTCAGACACGAGTCCTTTGCTAATCAATGCTGCGGCTCCTCGTCCCATCGGACCCCGCATGACAGCACCGATGACCCGAGTttagacacgcacacacagcaCAGCTCGGCATAAAACTCGAGCACATCTCTCAGGACTCAGGACAGGACTCACAGAGCGCCGAAGGACCTTCACCATGCAAACGAGAATCTTGCTGCTGACTCTGACCCTGACGCTGGGGATGAACATGATGGCAACAGGACAACCGCTTCACGCTGAGTGCAGAGTCATCTGGCTCTTTGGCATCCCATGCCAGGACGTTTATGTGCGTTTGGTGGACCAGATCAAGGCCTGGAAAGGCATGTCTGGCTGTATAACTGTTGGACAGAGATGCCTGTACGAGCTGGTGTCTGCTACACCTACCCACATCGCAGCAAAACACACCAGCAGGCAGTGGACCAGCAAGGAGGATCTCAACTTTCACCTGGTGTCAGCCGAGGAATCTGTTTGTAGAGTGATGGGATTTTCTATCTCTAAAGCATGGGCCAGGGTGGAAGACAACGGCATCACGTACTGCACTCTCTACAACCTCATCGAGGGCAGCGGGCTGGTGGAAGCCGCGGGTTATAAGCAGTACACGAACGAGTGGATTTGTCTGGACTACTCGACGGCCAACTGCACCATCTACTGATGAGATCTGCCGGTCTTCGATGTGATTTTCAGCAGTCATACACAGTTATATAGTTTGATAGCGTTATTGTTTGAATCCCAAGTGAATAACAACAACCGTGCTGAACTGCACCATTATTAAAGCATTGTGCTCGTT

Function


GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12713 lncRNA downstream 9141 1399408 ~ 1399728 (-) True G8479
TU12669 lncRNA downstream 71484 1335923 ~ 1337385 (-) False mfsd8l2
TU12668 lncRNA downstream 75765 1332845 ~ 1333104 (-) True G8443
TU12664 lncRNA downstream 98578 1309945 ~ 1310291 (-) True G8439
TU12635 lncRNA downstream 160279 1248176 ~ 1248590 (-) True G8415
TU12723 lncRNA upstream 48807 1462060 ~ 1462514 (-) True G8489
TU12804 lncRNA upstream 113938 1527191 ~ 1528417 (-) False colgalt2a
TU12914 lncRNA upstream 426919 1840172 ~ 1876938 (-) False G8599
TU12917 lncRNA upstream 460606 1873859 ~ 1876938 (-) True G8599
TU12913 lncRNA upstream 460756 1874009 ~ 1876938 (-) False G8599
XM_043255789.1 mRNA downstream 20005 1382577 ~ 1388864 (-) True eif4a2
XM_043255836.1 mRNA downstream 61102 1345142 ~ 1347767 (-) True kcnmb2
XM_043220642.1 mRNA downstream 70871 1331430 ~ 1337998 (-) True mfsd8l2
XM_043256922.1 mRNA downstream 135714 1264644 ~ 1273155 (-) True pcolce2a
XM_043218097.1 mRNA downstream 161607 1245074 ~ 1247262 (-) True chst2a
XM_043217775.1 mRNA upstream 2092 1415345 ~ 1425295 (-) True LOC122323714
XM_043261410.1 mRNA upstream 14623 1427876 ~ 1440763 (-) True ripk2
XM_043261685.1 mRNA upstream 62995 1476248 ~ 1514995 (-) True LOC122360826
XM_043219676.1 mRNA upstream 112495 1525748 ~ 1532557 (-) True colgalt2a
XM_043255412.1 mRNA upstream 146524 1559777 ~ 1562613 (-) False zgc:110366
XR_006247870.1 other downstream 23703 1385097 ~ 1385166 (-) True LOC122328981
XR_006247864.1 other downstream 23994 1384697 ~ 1384875 (-) True LOC122328955
XR_006247866.1 other downstream 24594 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 25085 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 205882 1179945 ~ 1202987 (-) False dipk2aa
TU13282 other upstream 1026108 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 1026871 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 1028931 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 1063460 2476713 ~ 2502739 (-) True G8921
TU13373 other upstream 1103526 2516779 ~ 2517260 (-) False LOC122358781

Expression Profile