RNA id: XM_043254699.1


Basic Information

Item Value
RNA id XM_043254699.1
length 3168
RNA type mRNA
GC content 0.47
exon number 11
gene id abi1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2563177 ~ 2581265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCGCTGGTTTCAATGAAAGAGGGGGAGAAGAGTAATGCAGAGGGATGTAAGATGGCAGAGCTACAAATGTTGTTAGAGGAAGAAATCCCGGCTGGAAAAAGAGCCCTAGTGGAGAGCTACCAAAACCTTTCGAGGGTCGCGGAATACTGCGAGAACAATTATGTGCAGGCACAAGACAAGAGGAAAGCGCTTGAGGAGACCAAAGCCTACACCACCCAGTCCCTGGCGAGCGTGGCCTATCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGTTGGATATTCAGGCTTCACAGCTGCGCAGGATGGAGTCCTCCATCAACCACATCTCTCAGACTGTCGACATTCATAAAGAAAAGGTTGCCAGACGAGAGATCGGGATTCTCACcaccaacaaaaacacatctcGGACCCACAAAATCATCGCCCCCGGCAACATGGAGCGGCCCGTGCGCTACATCAGGAAGCCCATAGATTACACCCTGCTGGACGACGTGGGTCACGGTGTCAAATGGCTTAAAGCAAAGCAAGGGAATAACCAGCCAGCTCGGGGAGGCGGAGGAACGTTATCCAGGACTAACCCACCCACACAGAAACCGCCAAGCCCACCCATGGCAGGGAGAGGCACCCTGGGACGAAACACGCCGTACAAGACACTGGAGCCAGTCAAACCTCCTGTGGTGCCTAATGACTACATGACCAGTCCAGCTCGCCTGGGCAGCCAGAACAGCCCAGGACGCACCGCCTCGCTCAACCAGAGACCCCGAACGCACAGTGGCAGTAGCGGGGGCAGCGCCGGGCGAGAGAACAGCAGTAATAGTATGGGAATCCCTCTGGCTGTGCCAACACCCTCCCCTCCCAGTATGGCACCAGTTCCTCCAGGTCCAGGTTTGGGCCCGATCCCGATGTCTCAGTTTGGAACAATCTCCCGACAGATCTCCAGACACAATTCCTCTACCACTTCTTCCTCTGCCTCTATGGTGTCAGCCACCGGCACCTACCGGCGCGCCCCTGCCAGCTCCTCCCAGTTCTCCGTGCCTCAGCCCCACCTGAACGGGGGTCCCGCGTACCCCCAGACCACAATGTCTGTCGCTCCACCACCTCCTCCCCTGGCGCAGCTGACGCCCCAGATTCCTCTCACTGGCTTTGTGGCCAGAGTTCAGGAGAACATAACAGACAGCCCATCTCCACCCCCTCCTCCTCTACCTGAGGACACGCCCCTGTTTGAGGAAGCAGCTCcgcctcctccacctccacctgtGGATTATGATGAAGAAGACGCAGCTCTGGTGCACTACAATGACCCCTATGCTGATGGAGACCCCCACTGGGCCCCAAAATCCTACATAGAGAAGGTGGTGGCCATCTATGACTACACAAAGGACAAAGACGATGAGCTGTCCTTCATGGAGGGTGCCATCATCTACATCATCAAGAAGAATGACGACGGCTGGTTCGAGGGCGTGTGTAACGGCGTGACCGGACTGTTTCCTGGCAACTACGTGGAGTCCATCATGCACTACGCTGACTAACGCTCAGTCCCAGAGACGGCGTACAGCGCAGCCAATCAGTTACAAACATTGCAAAGTGCATTAGGATATGACTGAATGTTCGTTTTCGTCCAATCGCCAATGTATCCAAACATCTGCAGTGCTCAAGGTTCAAGGAGACAGAAGAGTATGAAAAGAAACAAGTCTCACTGCTTTCTGGTTAGGTTGCCtcatatattttgtacatatattGCAGTGAGACGTTGCCTGTAGGCTGTTgctagtgtttgtttttgtgcgtGTTTTGTCATCGTATAGAGACCGTATTTGCCAAGTGTCAGCTAGGGCTAGTTAGTTTTGATTTTTACAaaaccgcttttttttttttttacctaaactATCAAGCTCTTCCTTTTACACGAGGAAGAAAAGTTTGAATGTCATTTTCTGGACTATTATTATGCCTGAAAAATCATTAGGCAACgatataaaaatgaaagttacGTCTTTTACCTACATTTCGCCTTCAGGTTTTGTGTAGTTTTACCTCATGACTGCAAGGTGAGGGAAAAGACAGATGCAGTAATGTGCAGAGATTCTCCTGCATATCAGACTAAACTTTATAAACCTGTGACCattatatacagtttttatttcgTTCATAGACAACAATGCCTATTTGTTTTGCGTTATATCTTTATATTCACAACGGTTAAGCACATTCTCCCCCGAATTCCTcctataatgcaaaaaaaaaaaagaaagaaatctcgTTCTCATTGCTGTGATGTCTTTCTCGTACTGCCATTAATTTACGCTGATTTTTAAgtatgataaaaatgtattacagtaatgaTAATCAataatggggggaaaaaagtaaaatgccTACATCACATGCAAAAATTCTCGATGGTCCTACAGGCTTCGTTTCCTTTATGcaaaacaattcttttttttcttttgcgaCTCAGACATGTTTTCACGAGGTTCACCCGTATACTGTGAGTTAAACCGTGCCAAGCTGGTCTTttgatggtgtttttgttgaaacTGCTGAAGTATTGTGAAGTTTTATGTTGCACTGAGCGGGCGACTCTGGCTCGCTTAGCGGGAGCCAGTCTCTAGCAATTGCCCACAGATTCGAGTTTGTTACACAAAAGTAGCAGAAATCCATTTCTTTCATTGTATATTTCATGTAGGGGGACCGTGCAGAGCtgaatttgtctttttctgttctCGGGCCAGTTTCGCTGAATTTAGATGATAATCCATAGATTTCATTGGGGGGGGGGGGTATTAAAAAATCAAGTTGTGTATAGTACTGATGAATGTGAGCTCATAACTGTTAGCATGGCACAAACATCAAGACGATTCTGGTTTCTGGTTTTTAGAAGCGTCTCAAACTGCTGTTGAAGGCGAgcagtgtttaatttatttaatccaatGAAATATCTGTGAGAATGTAACTCACATAGAGCTGTCTGAACAATGACCACTTGATGTTAAGCATTGCAAGGCCTTGTCATATGATGTGCAAGTGATCTGTAATTTAAATGTTCCTTTGCAGATTATCTGCAAATAATATAATCTCTGTTATcgttttgtatatataatctgtttttctttttatgtacaGTCTCTTTTTATAATAAAGCACTCTCCTGTGCAACA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA upstream 117977 2443588 ~ 2445200 (+) True G8737
TU13075 lncRNA upstream 241990 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 273137 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 274961 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 309586 2249222 ~ 2253591 (+) True G8703
TU13145 lncRNA downstream 31257 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 35942 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 36003 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA downstream 36003 2617268 ~ 2619357 (+) False LOC122355548
TU13130 lncRNA downstream 57277 2638542 ~ 2669943 (+) False LOC122355548
XM_043254814.1 mRNA upstream 9003 2548066 ~ 2554174 (+) False zgc:55943
XM_043254822.1 mRNA upstream 9003 2550286 ~ 2554174 (+) False zgc:55943
XM_043254791.1 mRNA upstream 18614 2541915 ~ 2544563 (+) True imp3
XM_043261780.1 mRNA upstream 53167 2495943 ~ 2510010 (+) True LOC122360938
XM_043261741.1 mRNA upstream 101955 2453850 ~ 2461222 (+) True LOC122360901
XM_043253930.1 mRNA downstream 17503 2598768 ~ 2606856 (+) True ap2m1a
XM_043253949.1 mRNA downstream 17503 2598768 ~ 2606856 (+) False ap2m1a
XM_043253940.1 mRNA downstream 17513 2598778 ~ 2606856 (+) False ap2m1a
XM_043220789.1 mRNA downstream 39577 2620842 ~ 2632556 (+) True dvl3a
XM_043224252.1 mRNA downstream 63730 2644995 ~ 2657785 (+) False LOC122328513
TU13121 other upstream 7856 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other upstream 7856 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other upstream 7856 2549892 ~ 2555321 (+) True zgc:55943
XR_006252635.1 other upstream 143222 2411165 ~ 2419955 (+) False LOC122358652
TU13086 other upstream 161432 2398954 ~ 2401745 (+) True G8725
TU13140 other downstream 10369 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 36003 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other downstream 36003 2617268 ~ 2669943 (+) False LOC122355548
XR_006247876.1 other downstream 36737 2618002 ~ 2618134 (+) True LOC122328998
XR_006247877.1 other downstream 37051 2618316 ~ 2618449 (+) True LOC122329004

Expression Profile