RNA id: XM_043255229.1


Basic Information

Item Value
RNA id XM_043255229.1
length 2859
RNA type mRNA
GC content 0.50
exon number 17
gene id si:ch211-188c16.1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4224724 ~ 4232354 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAACAGGGTGGGGCTGACAAATTCGTGCCCGGTTTAATCAATCAATAAGAACAATATTCCGCTGCCTGGACGCGTCGTGTGAGTTTTTTTCAagatattatgtaatatttatgcaattcGCGATTGGCCAAGGAGAATTTAAACGAACATGGAAGAGGAAGCCTGCAACAACTTCAAATCCATAAGGGCAAAGTTTCAGGAAGAGATCCAGGGGAGGTACAGACCCATGGTTCCTGAGAAACCCAAACGCCTCCCAACATCAGCCACGAGAAGCTCTGGTCTGCTCACCATGAACCTTTGTTCAACCGTGGAAACCAAGACCTCCAGTCAGCCCCAGGTCACAATGAGAGAAGACCAGAAATCACCCTCGGGAAAACGCCCTGTATCATTCCCGAGCACAACGTCTGAAGTCGGGATGCCTGGAGATGGCCAGAACAGGCAGTCGCTTAAAATACGCCGTTTGCCCCTCGTGTTGCCGCTTTCAAACGGTTCTTCTGCACCTCCTTCAAAGGGCATCACCTCGCCTCTCAAATACATCATGAAACCAATTCCTACACCTTTCGGCTCCACCAGAGTTTCACTGTGCGCTAAAGAAATTGGTAAAAATGGTCTGGGGCTTTTGAAAAACAGTGGTACGTTCAATGTTCAGATGGAAGAGGCCGGTGCAGAAGTCGGGGAGGTCCAACAGACCTCTGTCTCGCTAGATCGTTCAGCTCCGGCTTCGCCAAACGATTCGCTGACCGATTCCTCTTCCGGAAGTGCTTCTCATTTCTTTGACCAGCATGTGCTGAGCACGCTGGAGAAAGCCAAGAGGAAGCTCTGCCACAAGAACCGGTTGGTGTGTGGTAGACCAAAGGGCTTCTACTGCAGCAAAGCGCAAGTGCAGCTCACAGAAAGTCCTCCATCGCCTCCTGAATCTGAGAGGCGTCACCCAGAGACTTCGCCGGCGAAGGTTAACGGAATATCGCACGGCCCCATCTCTGTAATGGAGCTCGGTGGAGTCATGCAGCCGGGAAAAGCATGCAAACCTCTTCCTGACCTGGCATCCTTAGGCCCTGCGCCCTCAAAGCCACCAAGACCTCCGCATGTGGATCTGAGCAAATATAAAACTGGAGCTCATGAACCAAGCGAAGCTCTTACTATTGAATCTGTACCTGAGCCTGAGCCTGTGGCCCCTGCTGATGCATCGCTTGAAGACCCGAGCGTACCTCCGCCCGAATTTCCAGATTTTGACATCTCCGCACCAGAAGCCACAGACAGCAGTGCCATAAATCTGGCCGCCCTGGACTTAGAGGCCACTGAGTTTCCGGCGTTTGATCCGCTGCCGGGCGAAGACGCTGGCGTGCTTTCGGTCCGACGCGGTCTGAATCATTTCGCTCCAAACTGCATGCAGTCAGAAGGCGCTCTCTGTCGGTCCTGGGAGGACTTGAGAAACGAAGGCGCCCTGGCGTCTAACACAGAAtcggtgacctctgacctgagAATGAATGGATCGCACGCTACCTTCAGCCTGAGCAGTGAACACCCttCTTCTAAACAAAAGTGTCTTCACAAACCCTTTGATAATGTTTACGAGGATGTGGAAACGGTCCCCAGGTTTCCTTTTTCTCAAAGCTCTTATAAGTGTAAAGGAGCTCCTAAGAATCCGTATGCGGATAACAGCCTGGCGAAAGAAGAAACGTGGAGGAATATATGGCACGTCACTCAATGGTCTAATGCAGCTGAAGATCACAACGGTCAACATGAAAGAAAGAAGCAGCTGAGCCCTGAACATCATGAGGATAAAGAactgaagaagaaagagaagcagcgtctggagaaggagaagaaggaaCGGAAAGAgaaggataaaaaaagaaatgaaatgcacaaGAAATTTAAAATCACTGGACTGGAGGAGCCCATGTATCATGCCCGAGTGCTGGCGGACAGCAAACTACGAAAGTATGACCTGCCCGTCAAAAGCGGGGATCTCATCAGCATCATCCGAACAGTGAGCTGCCCCAAGGGCAAATGGCTGGCCAGAGACGCCAACAACAAATaCGGCTACATTTCCGTGATGAACGTGGAGTTGAACATTAAGGAGATGCTTGAGCTCGGAAAGAAGGTATCGCAGGCCACGGGACGAGGCCAGACGGATGGAGATAACCTCAGTGTCAGCAGCAGGTTTGATCTTTGCAGGTCCTCTCATCAGAATCCTGTGTTTACAAGTAGCTTCACTGATGACAGCGAGGAGTGGATGTACGAAGACGACACGCTGTCCCTGTCTGCTGAGAACGTGAGTCAGATCAAAGCCGCCTCCGTGCCTGAGATGTTTGATGGTAACTCTTCGGCTCATCATCCTTTCGTTGACTGGAGTCTTGAAGACGTCCAGACGCAAGAGGCCGAAAGCTTTCAGTTTGCAGACGTGGATCTTCTACCTCCTCCGGCTCTTTATGCCGACTCTCTGTGAGCTGCCGtGGTTTTGATTGCATGCCTCTATCTTTACCAAGAACATCCAGCACTGTCCTTCAAATCATCAAACCTGACTCGAGAGAAGATGTCTGAAAGGCAGCTCACTGCAGCATTTTGACGAAAGCGTGCAAGCCGTGGTAGATTGAGGATGGGTGACGGACGAGGACGGCTTCGGGGTTTTAATGAAATGGGAATATGGCACTTTTTCATGTGAGCTATCAAATTGCAAAACTGAAGCTCTCTGCATGGAATTGAGAGTGACTTTTGCATGCTGTCTACACCTTTAAGTTGCTTTTGTCTTCGTGTGTCTCATTGTGTGGGGATGTTAAAAGTCGGTGGTTTGATTACATGTTTGTtcaataatgaaaacacaactTCAATGAAATAAATGGATCTGTATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14012 lncRNA upstream 629 4223591 ~ 4224111 (+) True G9362
TU13907 lncRNA upstream 163764 4015450 ~ 4060976 (+) True G9304
TU13901 lncRNA upstream 203424 4013106 ~ 4021316 (+) True G9302
TU14006 lncRNA downstream 28414 4260768 ~ 4266016 (+) True G9356
TU14036 lncRNA downstream 147222 4379576 ~ 4379832 (+) True G9379
TU14039 lncRNA downstream 154573 4386927 ~ 4387444 (+) True G9382
TU14052 lncRNA downstream 226739 4459093 ~ 4462067 (+) False G9391
TU14051 lncRNA downstream 228762 4461116 ~ 4462842 (+) True G9391
XM_043261988.1 mRNA upstream 7732 4179540 ~ 4217008 (+) True LOC122361024
XM_043261959.1 mRNA upstream 7732 4208052 ~ 4217008 (+) False LOC122361024
XM_043261966.1 mRNA upstream 17628 4179454 ~ 4207112 (+) False LOC122361024
XM_043224133.1 mRNA downstream 305 4232659 ~ 4241076 (+) True gpaa1
XM_043256951.1 mRNA downstream 10754 4243108 ~ 4249001 (+) True rpe65a
XM_043220452.1 mRNA downstream 55664 4288018 ~ 4295033 (+) True ss18
XM_043261508.1 mRNA downstream 73247 4305601 ~ 4376997 (+) False LOC122360677
XM_043261515.1 mRNA downstream 73247 4305601 ~ 4376997 (+) False LOC122360677
TU14011 other upstream 1628 4222239 ~ 4223112 (+) True G9361
TU13731 other upstream 545806 3676425 ~ 3678934 (+) True G9173
TU13709 other upstream 607697 3615482 ~ 3617043 (+) True G9154
XR_006252450.1 other upstream 1484833 2729636 ~ 2739907 (+) False kdsr
XR_006252354.1 other upstream 1535113 2675370 ~ 2689627 (+) False LOC122356587
TU14081 other downstream 331543 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 346920 4579274 ~ 4588478 (+) True mylk4a
TU14280 other downstream 666044 4898398 ~ 4899286 (+) False LOC122361055
TU14284 other downstream 676775 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other downstream 676782 4909136 ~ 4909798 (+) False LOC122355892