RNA id: XR_006252350.1


Basic Information

Item Value
RNA id XR_006252350.1
length 3243
RNA type transcript
GC content 0.55
exon number 15
gene id rc3h1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1544773 ~ 1559774 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCACTCAACGGTTTCTTCTCTGGCTGCTGCTGGCAGTTTTACGCGAGGAACTCCCGAACTACTTCGGCAACCCGTTATAACGGTCGACATGGCGACCGAGGAAATAATCAAGCGTTTTCTTAAGAAAAGATGAAGATAGCCGATACACAgtTTCAGGTTTCACACCATGTGATGATCACCCGGGACGTGTGAACTTATTTAAGAACTCCTGTGTTCAGAAGATTTTTTGATTCCAGTGgaatctttcattttttttttccatctattATTCCCTTTTTGTTAAATGACACACCCAGTCACACGCACACCCAAGAGAAGCCCCCCCACCCTTGTTTACATGTAGAACAACCTTGCTACGATGCCTGTACAAGCTCCACAATGGACAGAGTTTTTACTGTGCCCCATATGCACCCAGACGTTCGAGGAGACGGTGCGGCGGCCCATCAGTCTGGGTTGCGGCCACACCGTTTGCAAGATGTGCCTCAACAAGCTGCACCGCAAGGCCTGTCCCTTTGACCAGACGGCCATCAATACTGACATCGAGCAGCTGCCCGTCAACTCGGCCCTGCTACAGCTGGTCGGGGGTCAGGTGCCCAAACAGCAACCTGTGGCGCTCATTACGTGTCCAGAGGACACTAAGCATTACGATGAGGCACGGCAGTGCGTTGAGGAGCTGGCCCTCTACCTCAAACCCCTCAGCAGTGCACGAGGAGTGGGGTTGAGTAATGCTGCTCAGAGCATGCTGAGCCGCCCGATGCAGAGGAAGCTGGTGACTCTGGTGCACTGTCAGCTGGTTGAGGAGGAAGGACGGGTCAGGGCCATGCGGGCGGCCCGTTCTCTGGGTGAAAGAACTGTTACTGAGCTCATTTTGCAGCACCAAAATCCCCAGCAGCTCTCCTCCAACTTGTGGGCTGCTGTCAGAGCCAGAGGCTGCCAGTTCCTGGGACCCGCCATGCAGGAGGAGGCACTAAAGCTGGTTCTGTTGGCCTTGGAAGACGGATCTGCTCTTTCCAGGAAGGTTCTGGTcctttttgtggtccagagacTGGAACCAAGATTTCCTCAGGCCTCCAAAACCAGTATTGGACATGTAGTTCAGCTCCTCTACCGTGCCTCCTGCTTCAAGGTGACTAAGCGAGATGAGGATTCTTCGCTAATGCAGTTGAAAGAGGAGTTTCGCACATATGAGGCACTTCGGCGGGAACACGACTCTCAGATTGTTCAAATCGCAATGGAGGGAGGTCTCCGCATCGCCCCCGATCAGTGGTCTTCCCTGCTGTATGGAGATCAGTCTCATAAGTCCCACATGCAGTCCATCATTGACAAGCTGCAGACCCCGGCGTCATTTGCTCAGAGCGTGCAGGAGCTGACCATCGCACTGCAGAGGACGGGTGACCCTGCCAATCTCAACCGGCTGAGACCTCACCTCGAATTGCTTGCTAACATCGACCCCAGTCCAGATGCTCCTCCTCCTACCTGGGAGCAGCTGGAGAAGGGGCTGGTGGCGGTAAAGACGGTGGTGCACGGCCTGGTGGACTTCATCCAGAACCACAGCAAGAAGGGTGCCGACACACAACAGCCACCACAGCACAGCAAATACAAGACGTACATGTGCAGAGACATGAAGCAGAAAGGAGGCTGTCCCAGAGGAGCCAGCTGCACCTTCGCCCATTCTcaggaggagctggagaaGTACCGTAAAATGAACAAGCGTCTTGCTGCAAGAGTGCCCTGCACCCCTGGCCTGCTGCCTGACGAGGTGGTCCCTCTGGAACCTGGGCGGAAGGCCTCTACGCTTACCAACGGGGGTCCTCTTCCCCAGCTCATCCCCAGAGGAACAGACCCCTCCTCGTATGACCTCCTACTCAAGCCCAAGATGGACGGCACTAGCCTCAGTGCTCCTGGGTCGCCACCCGACTCTTTGGATAAATCTAGCTTGGCCTTGACACCCCACCCTGTGCCTCACCCCAGGGCGGAGCACTTACCCATGCCCAAGCAGGTGCCAGTCATGCCCAGAGGTGCACCACAGATGTATCCACAACAGCAGCCCGAGCTCTTCTATCCAGAGCCAGCCCGACCTCCTCCCTCAGGATCTCAGTATGATGCTCAGTACCCAACAGGCAACCCCTACCCATACCAGCCCCCGCAGTATGTCCCTCCCCGTTATATTCGCAATCCGCCTCCTCCGGGCGAGCCACATTACCCAGAGCCCTACCCGGGATACGGCCCAGATCGCCAATATCCAAGCCATCACTCTGGTCCCCCTTTCTCAGCCCACACATATGCACAGCCTTCCCATTACAGTCGCAGACACGGACACTATCCCGCTCCCCCGCCTCCGTTTGCACCAACCAGAGACGACTTGGTCAGGATGAGCCCGGTTCCTTTGGACGTTCCCCCGGCTGCAATGCCGCCTCCTCCAGCAGGGCCTGCAGGTTCTCTGTACCACTCCCAGGAACCGTCATCTAGAGACAGATACCCACCGGACGGGTACTACACCGCTGGACCGCACCCCAGCCAAATGAGGTCCCACATAGGACAGGACCCGTACAGCCGCGCACAACCCAGTCTAGATGACTTGCATCGCAGGCGCAAAGAGCTTCTTGTCCAGCTAGAGGAGAGAAAGGTCATCTCTCCTCCCCCCTTCGCTGCCTCCCCGACTCTCCCTACACACCCGTTCCCTAATGACTACCCTCGGGAGTATTTGGAGGATGGCTCTAAAGCCTTTGGAAGTCGGGAGCCGGACTACGCTGGGCAGTATTCCCCCTGGTCATGTGACACCATAGGATCATACATTGGCTCCAAGGATGCTAAACCAAAAGATGTCAGTAGTGCTGTGGAGATGATGAATGCAGAGGGTAAAGTTCTACGTGAACCTCCACTGGACACCCAGCGGCGCTCTGCAGAAGCCAAAGATGACGATCCCATCATTCCCTTTGGTCCTCTGCCCACTGTGTCTCCTTTTGGTGCCATTTCACGTACCTCTAAAACGGGTTACCAGACCACTGGGCCTGTACAGGCCATAGCATCCTCACAGGCCTCGGGCTCCAAACACATGACCATGACAGGTGACTGAACATCTTTATAATACCTAGTACTTCATCATACATAGGGATGGGAATTGAAAGGTGTTATCAACAATTCTTAATTCAGACTATCCGTATGGAAACCACAGTGGATGGGGCGGTGCGTCGTACCCTCAGCACCAGAGCATCAACTCTCAGGGACACTTCAGCGAGCG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12698 lncRNA upstream 119478 1415326 ~ 1425295 (+) True G8469
TU12699 lncRNA upstream 128309 1407651 ~ 1416464 (+) False G8469
TU12694 lncRNA upstream 136063 1406988 ~ 1408710 (+) False ccdc39
TU12674 lncRNA upstream 158787 1383892 ~ 1385986 (+) True G8449
TU12676 lncRNA upstream 162450 1382119 ~ 1382323 (+) True G8451
TU12760 lncRNA downstream 44932 1599046 ~ 1673755 (+) True G8508
TU12775 lncRNA downstream 78202 1632316 ~ 1636622 (+) False G8519
TU12776 lncRNA downstream 78202 1632316 ~ 1636622 (+) True G8519
TU12857 lncRNA downstream 127313 1681427 ~ 1683093 (+) True G8556
TU12881 lncRNA downstream 351252 1905366 ~ 1910679 (+) True LOC122360854
XM_043219688.1 mRNA upstream 19199 1517697 ~ 1525574 (+) True zgc:153115
XM_043219696.1 mRNA upstream 19199 1517745 ~ 1525574 (+) False zgc:153115
XM_043253906.1 mRNA upstream 71924 1469060 ~ 1472849 (+) True asip2b
XM_043261438.1 mRNA upstream 96874 1440938 ~ 1447899 (+) True LOC122360630
XM_043261429.1 mRNA upstream 96874 1440938 ~ 1447899 (+) False LOC122360630
XM_043255388.1 mRNA downstream 8891 1563005 ~ 1568542 (+) True extl2
XM_043262111.1 mRNA downstream 37879 1591993 ~ 1598263 (+) True LOC122361145
XM_043224318.1 mRNA downstream 293972 1848086 ~ 1855235 (+) False rgs18
XM_043224326.1 mRNA downstream 294930 1849044 ~ 1855235 (+) True rgs18
XM_043218894.1 mRNA downstream 310391 1864505 ~ 1867191 (+) True rgs1
TU12491 other upstream 716564 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1094754 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1094754 447162 ~ 450019 (+) False LOC122360757
TU12228 other upstream 1321730 214409 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 624652 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 624652 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 716567 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 844840 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 857051 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile