RNA id: XM_043255474.1


Basic Information

Item Value
RNA id XM_043255474.1
length 3408
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122356587
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2675370 ~ 2689627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atcgcGAATTTACATAGCCATCTTGTCGGGAGGTgaaatttttagattttctgtttCCGAACTCTGCTAGTTGTAGTTAGCCGTAAACTTTCATTTCAACCCGTTTTCGTGTTTGATTTGTTAGTACGCCGGTATCTAGTCGCCGAGTGTCGTGGCGTATTAAGCGGCGTTTAAACGCGCTCGTTCAGGATGTGTTTGATACTTATATGTAGGTAGAGAAGTGAGAGGCAGCAGGGGGAGTGAACGCAGCCGAATCTACGACAGCGGCCTTACACAGACCGCCCTTACCGAGCTCCGATCACCAGCATATGAGGAGAAATTAATAACCGACACGTCATCTCGCGCACACCGCTCGCGGAGGTTGTTTTCGTCCGCCGCGCGCGCGTCGAAAATGCAAcaggagagaagaggaagacGGATGACGCACGATCGTCGCGGAAAACTGTGAAACTTGGGGCGACTGTTTGCTGTTTCGTCAAGCCAGCGGCGTCTTTAAGGTGTCTCAAAAAGCCGTAAAGCATGTCTAAGATGCCGGCCAAGAAGAAGAGTTGCTTTCAGATCACGAGTGTGACTCAGGCTCAAGTCGCGGCCAACAGCGCGACCGACGACACCGAGAGCCTGGATGACCCGGATGAGTCCCGGACAGAGGACGTGTCCTCCGAGATATTTGACATGTCCAGGACTGAGGTATGTGACAGGAGCTCCTCAGAGGAGACTTTGAATAATGCGGGGGACTCGGAGGGCCAGACTCCCCAGAACGGCGGGCTTGGACCGCGCAGCTCGGGTCACCAGGGCGTCCAGGCCCCTGGGGTTCAAACGGCGCAAGTCACCGGTTCGTCAAGCGCGGCGACCATAACCAGCTGCAGTTCTCGCTTCAGGGTCATTAAGCTCGATCACGGCACCGGGGAGCCCTTCAGGAGGGGCCGGTGGACCTGTACGGAGTATTACGAGAAAGACCCCGAGGGCTCCGCGATGAGCAGGACTGTGGATAGTATAAGGCACACCAATGCGAACGAGCCCGGAGCGGATAGGGACAGTGGGCTCGGGGCCACGGTCGGCTCCGTAATGGCTCCTGATGTAAATTCCGACGGGACGTGTTTTACCGGCCCGCCTCACAATCTAGAACCGCACAACTTCACCGTGGGGTCCGGGTCGCCCGAATCTTTTAGTAATAAGCCAGTGCCTCCGTCTGCTCAGCACGGTCTCCATCCGCCCGCTCACGAGGGAGGACACCCGGGCGCCCATCTTCAGAAATCTCCCAGCATCCCTCCTTCCGCTCAAGCGCAGCCGCTGCTATATCAACCCCAGCCTATTACGCACCAACTGCAAAACCAGCCGGTCTTGATATCCACCGGTCAGCCTGATTACGCCCAGCGCAGCTTGCCCATTACGGTCACCCAGACTCTCCCCGGGGTGAGCCTTTCCGTCGGACACGTCATCAGCCAGGGGCCGTCCCCTCTTCCGACCCCGGCCGCAGGAGGGGTGCAGGTTCTGGGTGCGGTGGATATATCGGGACTCCCTGGAGGTGTTTCCTTGGCGAGCGTGCCGGTGTCGTCCGTCCCGAATCTGGTGCAGCATCCCGCGGTGGGGCTGTTGAGCAGCATCGCCCCGTTATCCTCCATTCAGCAGCAACCGGTGGCTCAATACCAGGCTTCGGGAGCGATGCACGGTTTATCGACAACTCCGCAAAGCGCTCCGAGCTTGCCCGTAGCAGCCGTGGCGCTCGCTGTAGCGTCCGCTGCGCTCCCCAATACCTCCTCTCATAGCCAGGCCAGCATCTTCAGCCAGGCGGATGAGAGCCGGAGGATGTCTGATGCGTCCGCGCAGGTGCACAGTAAAGACACGGTGAAGCCCTTTAtcacagaaggcctgcagttgCCCAGTCCGGCTGTCAACAGTCTTTTCGGTATACCCATTCCCATCGACGGGGAGGACGACAGGAATCCCTCCACAGCTTTCTTCCAAGCCTTCCAGTCTGGCAGTAGGCTGAAGGACTCGAAGATGACCTGTGATAGTGCCTCTGGAGCAAGCGTGGTTGCCATTGATAATAAAATAGAACAAGCAATGGATCTAGTGAAAAGCCATCTGATGTATGCTGTGCGGGAGGAGGTGGAGGTGCTGAAGGAGCAAATCAAGGAGCTCTACGAGAGAAACTCTGTGCTGGAGCGAGAGAACGCCGTGCTCAAGTCTCTGGCCAACAATGAGCAGCTCTCTCAGCTCACGGTCCAACCCGGCTCCGGCGGCCCCGTCCCGGCCCAAGCCCAGCCCCAGCCTCAGCCTTACCTTCAGCTGGACTCCAGCCAGAGCTCGGACCCCCTGCCCCGAGCGCCCCAGCCCAGCGTCACCTCGGCCTGAAGCAGCGGGAGAGCTCGCGAAgagagttatttttttaataaagagaaTCCAGCCAAGAAAGAGGTGTATTTTTTAGCATTGCAGTTTTCACGTAAGAAGCGAGAGTCTATTTTCAGAGCCACCGTGCTtcgtgtttttttgtttttgtttgttttttttccattcaccGGTCAATTCAattgtactgtttatttattatagggCTGCTATTTTCCCGAGAGGAACAATGTCACAGAACCCTTCGATCCGACAGCGAGCGGCCGTCTTTTATCGTATCGATCATCAATGCAAGCGTAAAACCGTGGCAGAGTTAGCGAGTGGGTAGAGTTCAAACACTAACAGCGACGTTTCTCTGTGGATTAAGAATGTGAACCTGGCGTGAATGTACATTGTGTATAGTGTAAAGATGAACAGAGCGTAACAAGTCTGTACAGGTTTGCGGGCGAAGATCTAAACTGAATCCTCAAAGGTCTACCCTGATGAAGAAAGCTTGTAGGacgttggaaaaaaaaaaaaaaaagaagtcagtTGCCATATTCTCCTGCCCCCTACCCTGATGTCTCGCGCTTTTGGGGAACGGGAAGgggatttaaaaagaaaaaaaaaactgtgaagtCGTTCAACCTACTTTGTAACCAAAGATGCAAAgctgtgtaatttttttttgttttgtttttttatatgcgcactctgtatttttttttgttttttttacttttaatttgttcctcacaacaaactttttttttttttttttttttgttgcttttaggCATGTTCTGCATGATCTGTAAAAGTCAAACCACTTTCTTACCTCATTTGTATTGGGCACTCATATTGTAAGTAGTCTGTGAATAGCGTCGGCGGGGGAAGGAGATATGGAGGCGATGGTGAGGAGATGTAAAACCGGCTAAGTGCGCGTGAGACGCACCAGCCACAGAAAATGAAGTGAGCCATGTTTCGTTCATTTAAATGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTgcaaattttaatgtatttaaataaatgcaatattcaaATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13130 lncRNA upstream 5427 2638542 ~ 2669943 (+) False LOC122355548
TU13126 lncRNA upstream 5773 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA upstream 56013 2617268 ~ 2619357 (+) False LOC122355548
XR_006252229.1 lncRNA upstream 56492 2617207 ~ 2618878 (+) False LOC122355548
TU13145 lncRNA upstream 62266 2612522 ~ 2613104 (+) True G8764
TU13183 lncRNA downstream 129445 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 129445 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 129445 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 222664 2912291 ~ 2912787 (+) True G8816
TU13511 lncRNA downstream 427221 3116848 ~ 3121053 (+) True G9022
XM_043218780.1 mRNA upstream 14341 2658403 ~ 2661029 (+) True ahsg2
XM_043224252.1 mRNA upstream 17585 2644995 ~ 2657785 (+) False LOC122328513
XM_043224241.1 mRNA upstream 17585 2645117 ~ 2657785 (+) True LOC122328513
XM_043220789.1 mRNA upstream 42814 2620842 ~ 2632556 (+) True dvl3a
XM_043253949.1 mRNA upstream 68514 2598768 ~ 2606856 (+) False ap2m1a
XM_043217897.1 mRNA downstream 5794 2695421 ~ 2701972 (+) True LOC122323799
XM_043256604.1 mRNA downstream 27946 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA downstream 32584 2722211 ~ 2729493 (+) False vps4b
XM_043256623.1 mRNA downstream 40009 2729636 ~ 2739907 (+) True kdsr
XM_043260587.1 mRNA downstream 53088 2742715 ~ 2780678 (+) True bcl2b
TU13128 other upstream 5427 2617268 ~ 2669943 (+) False LOC122355548
TU13131 other upstream 5427 2617268 ~ 2669943 (+) False LOC122355548
TU13150 other upstream 38784 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 38784 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 56921 2618316 ~ 2618449 (+) True LOC122329004
XR_006252450.1 other downstream 40009 2729636 ~ 2739907 (+) False kdsr
TU13709 other downstream 925855 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 986798 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1532612 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1874270 4563897 ~ 4570094 (+) False G9416

Expression Profile