RNA id: XM_043256101.1


Basic Information

Item Value
RNA id XM_043256101.1
length 984
RNA type mRNA
GC content 0.41
exon number 9
gene id si:ch211-71m22.3
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1019747 ~ 1024763 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAAAGTACTCATTGTATGCTCTAgaaaccccccccaaaaacatttattgtacatCACTGCCACTTTCTAACAGACGATCTGTATCTCCCTGataaaTTCAAATATGGAAATGTCAGAGTGCACTGCAATGATTTCTTCCCCAGACCAGTACCACTGTCCTTATCATCTGGAAACCTTGTCCAGGatggaTCAATTGTTTGTCTTCAAAGAAGAATCCATGGAAGAATGTGCTGCAGAAGTTTGCTGTGGAATAAGGCCTTCAAAGAAATTTAATGTGAATGATGACACCGGAAAGAAGGTCTTCAGTATTATTGAGGACAGCGAGTGTTGTGAAAGGCAATGCTTTGCTGGTGGACGTTTTTTCATAATGAATGTTACTGACCTCACTAATCAAGAGGTCATCAGACTGGTGCACCCATTTGTTTGCTGCAGCCAGAAGTTGGAGGTTCAGTCTCCACCGGGCACTACCATTGGATATGTTGAACATAACTTACATGTTTGCCTGCCTAAATTCACTGTTGCGAATGAACGAGGTGAACCAGCATTTAAGATAGAGGGACCATGTATGGGTTGTACCTGCTGCACAGATGAAAACTTCGAGCTGGTATCTTTGAATGGAGCAGCACTAGACAGATCATTTGGGAAAATCAGCAGATCTTTCTCATACAGTGGACCAAACGCAGGTGCAAAATTTGTGCTGAGCTTTCCAAGACACCTGGATGTCAAAATGAAAGCTACTGTACTGGGAGCCTGCATgcttattGACTGCATGTATTATGAAAAGCCATCATAAAAAGAAACCTTACTGTAGGCCTGCTTGAGACAAAAGAAAGGATAAAATACACACGTCTGACTGCTTGCCATCCTCCAATAAAGGCTGAAGGGAGAAGTATATATGACCACCTcttaagacaaaaacataaactaaaCCAAGAACACTGCAAGCGTACCtgtttaaactaataaaaaaataaaacattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12330 lncRNA upstream 237002 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 335554 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 348184 668304 ~ 671563 (+) True G8173
XR_006247819.1 lncRNA upstream 374821 643034 ~ 644926 (+) True LOC122328698
XR_006247267.1 lncRNA upstream 384981 634151 ~ 634766 (+) True LOC122325219
TU12606 lncRNA downstream 155367 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 172664 1197427 ~ 1203014 (+) True G8393
TU12676 lncRNA downstream 357356 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 359129 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 382225 1406988 ~ 1408710 (+) False ccdc39
XM_043257386.1 mRNA upstream 13143 995837 ~ 1006604 (+) False miga1
XM_043257378.1 mRNA upstream 13143 996929 ~ 1006604 (+) True miga1
XM_043257400.1 mRNA upstream 13143 996929 ~ 1006604 (+) False miga1
XM_043257393.1 mRNA upstream 13143 996934 ~ 1006604 (+) False miga1
XM_043257429.1 mRNA upstream 67353 875758 ~ 952394 (+) False ak5
XM_043256214.1 mRNA downstream 2530 1027293 ~ 1032989 (+) True LOC122357034
XM_043219803.1 mRNA downstream 10912 1035675 ~ 1039604 (+) True LOC122324991
XM_043256987.1 mRNA downstream 27317 1052080 ~ 1061274 (+) True LOC122357578
XM_043224735.1 mRNA downstream 37426 1062189 ~ 1067442 (+) False si:ch211-71m22.1
XM_043224725.1 mRNA downstream 37973 1062736 ~ 1067442 (+) True si:ch211-71m22.1
TU12491 other upstream 191538 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 569728 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 569728 447162 ~ 450019 (+) False LOC122360757
TU12236 other upstream 796704 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 520010 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1154003 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1154003 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1245918 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1374191 2398954 ~ 2401745 (+) True G8725

Expression Profile