RNA id: XM_043256623.1


Basic Information

Item Value
RNA id XM_043256623.1
length 4426
RNA type mRNA
GC content 0.45
exon number 10
gene id kdsr
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2729636 ~ 2739907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaatcaaattaaatggcGAAGATAGAGTAAATACGACGCTCCTCAACATTAATCAAGAAAGTGACAGTTATTAACAGTCTTCCTGCTCCGAAAGGAATGTTGTGCTTTGGAACTTGTAGTCCGTTTTCTTAAAGTCTGCTTTGACGCGGTAAGCGGAGGCTTTGAAAAAACTACAACTCCCATAACCCCACCGCACAAACGCAGCCAGCATCCCGTTCAAAGTGCATAGATTCTCTGTTTTGGTTCACGTAGAGAACGGAAAGAGTTAGCTTTTGCAGTCTCGCGGCTTGAATTCAGTATTTATTCCACGTTACAGGCCTTCAACACATTGCTAGATAATAAAAGAGCATAAACGGCTCGTTCGAAGGCCTGTTATCTTCTGTCCGCGAGACGGGGGAGTGTCTGGAATTGGACATTTAGCTTGTGAGCTAACGTCAGCAGCATCAGGTTGACCCATGTCCTCTGAGGAGGCTCTCGGCTCCGCGCTCTCACACTGGCTCTCCTTTAACTCCTGGTGGCTGCTTCTGCCTTTCGTCATGCTCCTGGTAGTAGCTGCTTTCATCGTGGCCTTCGTGCTGCTGCTGTACATGATATCTCCGTTAATAAGCCCCAAACCTCTCAAACTGAACGGGGCCCATGTGGTGGTGACCGGAGGCAGCAGTGGGATCGGGAAGTGTATTGCCATGGAATGCTACAAACACGGTGCCTTCATTACTCTGGTGGCACGGGATGAGcacaaACTGGTTCAAGCCAAGAAAGAAGTGGAGAAATGTGCCATAAACGATAAGCAAGTGGTGCTTTGCATTTCTGTCGACGTGTCAAAAGACTACAATCAGGTGGAGAGCGTCATAAAACAGGCTCAAGAGAAGCTGGGTCCCGTGGACATGCTGGTAAACTGCGCCGGGTCGTCTATATCTGGGAAGTTTGAGGAAGTGGAAGTCGACCGCTTCAAGAAACTGATGGAGGTGAACTATCTGGGCAGCGTTTACCCCACCCGGGCAGTGATCACCACTATGAAGGAAAGGCGGATGGGCCGCATCATGTTTGTGTCGTCACAGGCAGGGCAGATCGGCCTCTTTGGCTACACGGCCTACTCACCGTCCAAATTCGCCCTGCGTGGTCTGGCTGAGGCCTTACAGATGGAGATGAAGCCCTATAATATCTATGTAACTGTGGCGTATCCTCCAGACACGGACACTCCAGGTTTTGCGGAAGAGAATAAGACTAAGCCTCTGGAGACAAAGTTAATTTCAGAAACATCTGGAGTGTGTCAGCCTGAGCAAGTAGCAAAAATTGTGGTGAAGGATGCGGTGCAGGGAAATTTCACCAGCTCTTTTGGACCCGATGGCTACATGCTGTCAGCGCTGACCTGTGGGATGTCACCGGTCACCTCCATCACCGAGGGGCTTCAGCAGatcGTGACGATGGGGTTGTTCCGCACCATCGCTCTCTTCTATCTGGGCAGCTTCGACAGCATCGTCCGTCGCTGCATGATCCAGAGAGAACAGTCCAAAGCAGCCGACAAGAGGGAGTAGAACCAGCATTCCCAGCACATGCACCTCCATCACCTCCGTCAGCACCactaacacacgcacacacgtacacacacacacacacactgcagattTTTTCCAGTAGACCCGTAATAGGCGTCCATCTTTCATGACGCGTCTTTCAGGACCCCGATCATTCCAGTGCATGCTGCATCGATATTTCAAGCTCTTTAAAACGaaacctttttttgcatttaaacgATTCACTCGTTGGCTCTCACTGCCTCTAGTACATTCTCTCGTTTCTGAACGTTTGTGGTCGCTctcaaaaccacacacacactatctgaGTTCTTGTTCTAGCCTGTTGGCGTAATGTTATTACAGCACTACAATTCagtacacttttatttatattgagaTGTTACCATTTGCCgtataggtaaaaaaaaaaaaaaaaatctgtataggTGAAGAACAACAACTTCACTTCCTTATGTTACAGTGAGGTGAAGAGCTGTTCTTCTAACTGGTCTGTGATGTTCGTAGTCAAGCACTGTATCTTCCTGCTTTTAGATTTCATAGTTTTAAGGTACGGACACAGGACATCTGTGTTTTCGGATGAAACAGCCTGAGTCTGCCACTCTGCCTTATCTTCTTTGCTCTGTGTGGGGTTTCTGAAGGAAATGTTTACCTTATAAATGTgcgagtgtgtatgtgtatttgtctgCTCGTACGCATGCGTTTAGGTGACCTCAGGGGCTTCTAAGAGTTCACTGAACCGAAGGATGGGTCAGGATAAGCCATTGCGTCAGTGAAAGGCTCGCCGGCTCGAGCCACTGCACCTCTCCGCCGGCAGGTGGAGCTGGAGATCCAAACGGATCGGGTGTAAGCTGAGCAAAAGCCTACGTGTGAGGCAGCTCGCGTTAAAAAGCTGATCTAGAATCGGTCGTAGTCGGATGCTTCGACGTCCGCAACCCCCAGAACTCCGCAGGATCGAAGGTGAATCAATGCGAGCTCCCGCAGGCATTTCAAAACTGTAGATGTCGTGAAGCTTGATCAGATTTGTACGCCAAAACAAGCAATATGGCTTCCCACAAGTCAAGTGAATTTCCTCGTGCTCTCTTGCTCTGTCGTAATGCATATAAACCGTTTTCTGATATAGGCCTTCCAAACTCGCCCCTTGTCCTCGTCGCAAGTCGTACCTTAACACAATAGCTAGAGAGGAGACCACACTTACTCACGCTGTTGTAATATTTGCCTTCCTCACTGTCACAAGCAAACGGGGAGCATGTGATGTGATCACACAGTTACACGAGCGGATGTTCATGAGGAGTCGATtgaaagtgatagttcacccaaaaatgtacgTTCTGTTATTTACTCGGACCCGTAGGACTTTCTGTTCTTGGTAGGACACAAAAGGAGAAGTTTAGCGGGATGCTACCTCTTTCCTCCTCCTGCAGTAAAACGTGATTAGGCTCCAAAATAAACGAAACATTGTAAGAGCGATCCATATGAGATCAAATATTGAAATTTCTTCTTAAAAGCATGATTGATTTGTGTGAGAAAAGTATACTTTACTTGAAGCTGAACTCAATACTCAACTCTCAAGACCTCAAATATATTGTGCACGATTAACATCTGCTTCAATTTTTTCGTAATCATTTGTCTAAATTTCTCTTTCAAtccacagaacaaagaaaatccTATAGTTGTCACGAgtctgaataaataatgacagcattttcatttttggctgaagcAACGCTTTCATTCagtacagcttttttttttttttttttttttaatgctgctcCGCTTTCCCTAGAACATACCTGCAAACTCGTCCGCTTTGTTTTTTCGTCTCGCCTACATATGAAGCCTAATAGTGATCATAAGCCCAGCCGCTGCATTTCTGCTTCCTCGCAATGCAGCCATTTAATAGCTTGTAATGTGGTTAACTGTTGCTGTTTTAGTCAGAACTGTAACTTGTTTAAATGATAGTTTTGTGGTCATTTTAGGGTTCACCATACACATCGGTGTCGCTACCTAAACAACACGTAGTTCTATTCCCTAAACACCCTTTTTCCATTCCCTGTCACTTTTTTTCCGCCAGGCCAGAGTTTGCAGGTAAACCCTTGACCGATGCAGTCAGGTTCTACAGTCACGGAGGCCCATTTTCAAGCCTTAAGAGATCCAAACACAGACCACTACAAAAGCTATAAGGGTTGATACCTCCACATCCAACTATGGCATAGATTGTGTATGGTTTACGTGTATTCGTTTCAGTACGGAAAGAAAAGTGCATcgtttttgcttgttttcgtTCGTTTGTACATTATTTCctatggatattttttttttacaaaaagacccaaaatatgaaaatgagaatGCATGAGTCAAAACGACGATGTTCTCATTTGATATTGGCTCGAAGCACGTCGTCCGGCACGTAGTAGCTGTAAGTTATGTGTCGGACGTACGATTCGGTCGTGCCCTCTTCCATCACACGCGGACAAAGTCATTCGTTTTAGTCGTTAAGAAGCTAACAGTAGAGAAATTGTTCCTTAACTCCTTAAAGCTATGCAAATCAAGCCTGTGCTCACgattcattcaaacacacaagAGGACActagcgctttttttttttttttttaagttgtctgTAGTTCAGTCTTTTATTGACTGAAGTCGAGATATTCCCGAGAATAAGATGTATAGTTtgagttacttttaaaagaaagaccAAGACCGAACTTGGATGCATTCCGCTTCTGTGTTTtgtaagtttctttttttttttccttattcaTTTGTTGCCAAACTTGCATAAATTTCACCTTGTGTGccatgggagaaaaaaaaggatgttgttgcttttgtcttattttcttacataatgaaaataaataacttttgaaAGGTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K04708 KDSR; 3-dehydrosphinganine reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13130 lncRNA upstream 59693 2638542 ~ 2669943 (+) False LOC122355548
TU13126 lncRNA upstream 60039 2617268 ~ 2669597 (+) True LOC122355548
TU13127 lncRNA upstream 110279 2617268 ~ 2619357 (+) False LOC122355548
XR_006252229.1 lncRNA upstream 110758 2617207 ~ 2618878 (+) False LOC122355548
TU13145 lncRNA upstream 116532 2612522 ~ 2613104 (+) True G8764
TU13183 lncRNA downstream 79165 2819072 ~ 2872749 (+) False G8794
TU13184 lncRNA downstream 79165 2819072 ~ 2856409 (+) False G8794
TU13185 lncRNA downstream 79165 2819072 ~ 2861106 (+) True G8794
TU13209 lncRNA downstream 172384 2912291 ~ 2912787 (+) True G8816
TU13511 lncRNA downstream 376941 3116848 ~ 3121053 (+) True G9022
XM_043256604.1 mRNA upstream 143 2717573 ~ 2729493 (+) True vps4b
XM_043256611.1 mRNA upstream 143 2722211 ~ 2729493 (+) False vps4b
XM_043217897.1 mRNA upstream 27664 2695421 ~ 2701972 (+) True LOC122323799
XM_043255474.1 mRNA upstream 40009 2675370 ~ 2689627 (+) True LOC122356587
XM_043255488.1 mRNA upstream 40009 2675372 ~ 2689627 (+) False LOC122356587
XM_043260587.1 mRNA downstream 2808 2742715 ~ 2780678 (+) True bcl2b
XM_043222200.1 mRNA downstream 215802 2955709 ~ 3064602 (+) False dpp6b
XM_043222186.1 mRNA downstream 230311 2970218 ~ 3064602 (+) False dpp6b
XM_043222193.1 mRNA downstream 237865 2977772 ~ 3064602 (+) True dpp6b
XM_043222206.1 mRNA downstream 273213 3013120 ~ 3064602 (+) False dpp6b
XR_006252354.1 other upstream 40009 2675370 ~ 2689627 (+) False LOC122356587
TU13150 other upstream 93050 2635241 ~ 2636586 (+) False G8768
TU13151 other upstream 93050 2635241 ~ 2636586 (+) True G8768
XR_006247877.1 other upstream 111187 2618316 ~ 2618449 (+) True LOC122329004
XR_006247876.1 other upstream 111502 2618002 ~ 2618134 (+) True LOC122328998
TU13709 other downstream 875575 3615482 ~ 3617043 (+) True G9154
TU13731 other downstream 936518 3676425 ~ 3678934 (+) True G9173
TU14011 other downstream 1482332 4222239 ~ 4223112 (+) True G9361
TU14081 other downstream 1823990 4563897 ~ 4570094 (+) False G9416
XR_006247003.1 other downstream 1839367 4579274 ~ 4588478 (+) True mylk4a

Expression Profile