RNA id: XM_043257124.1


Basic Information

Item Value
RNA id XM_043257124.1
length 4364
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC122357653
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2038907 ~ 2052126 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttgttttatacattttagttgAATAACACATTATATTGAGTTGTGTTTAAGGATTAAAGGACAtgtaactgaagaaaattacCAATATTGTCCCTTTTTCAGTGTATTATTACGGTAATAATATGTTTTGGCAgattataatcaaataaatcattgtaccacaatattaaaaaacaaacaaagaaagaaaaaacaacataaaattttacatttattcggATCATATTAGCGGGCGgttttactgatgttttattctgatgaaaataaaaaggatttaaataaccttaatgaaaacattaaatggactcatttaaatgttaaatatctgccaaaaatgtttcatattaattttaatagatCAGGATGGGTATTATATGTTCACAAAAAAGGCAAGATTGCTAAAGTTACTCTTAGAACAACAATCAAAAACTTATTTCTATTTGATATCCCTAATTCAGTCAGGAAATACTACCTCTACTTATTTTCCATGAGTGATCTATTAATGATTTCTAGTGTGTCAGGTTCATCTACTCTCTCAGAAGATCATTAATGCTGTACTTTCTCTTGCACTACTTCATTTTCCTAAATCAGATGGTCTGTCCCTCTCTCATCTCATTTACcttcaattaaaattacatttcccTGTTTAAGGGCCTCCATTACTCAACAAGAGTCAAGTATCTGTGACCCGCTATCTTCATTATGTTTCCATTAGCTACAAAGCTGAAGCTTTACTTTGGAACAAAATCTGAAGTTGCATGTGAATAAACAACACGCTCAGAGCAAAATTGCATATTGCACTATATTTTTAAGTCTTGGATTATGTCATTTTTCTTGGGTCAAACGTTTGTCTCCTCGCATATCGGGATTTGGCTCAGAGTTTAACTGGGATTAAGTGAAGACTTATTTGGTAGAAGAaattttgtgaattattattacaatttaaaataacattcttGTAATGCAAAGCTAAATGTTTTGGGGTTTAGTGTAAAATGATACAGAaatcatgctgatttgctgttcaagaacttttttgtttgcttacATTGCTTAATATCATTATTCTTTGGTATGGTTTTCTATTCATCGTCATTCCTTTATACTTTCTTTCTGTTTAAGAGTTTTCCACATATATACTGAGTAGCAAGCCACTATTAATAATCAAGAACATATTAAAGGCCTAACTGGGCAGCAAATCAGCCTATTAGATTTCTGCCAGATCATGCCatactgaagtaatgatgctgaaaatacagctttcccgtgagaaataaatgtcattttaattgatattataataaaatacaggcattttaaattgcaataatagctcatttcatgtttttgcaaGAACTAAAAATCATAGCAACCACAAACATAAACGCTGAAGGTGAATGGAAAGCCCATTTCATCGAATATCCACTCACCCACAGAAGATTAAATCCGTTCTCCACTTCATTATGCcgtatgtatgcattttaacatCGTGCAGGTCGCGCGTTGTTTTGAATCGCTGCTGCGCATGCGCTCGTAGAAAACAACCGTTAAAAACATGGCGCTTCTTGCGTAAAACGGACTTTAGGCTACTGATGTGATGCTGAACCTAACAGCATTTCATTGGTTGCAGGTAATATGCTGAAACGCCTTAAGTCACGTTTAGAGTTATTCGGTCATTTTGATAAACTACGGGAATTTCGCGCTTAAATTTCGCCTCATTAAACTAATTTGCTTGATTTTGAAAGTGAACTACATGCACGAGCTGGCTTTCACATGGCTACACTtttcaaaacagacaaaataccGCGCGGTTTTCACTTCTGTCTGAATTTTACCCCTTTAAGCGTCGCCCGTATTCGTAACGGTCCCACTTTTCCCCTCACACGTGTGTTACAAATAAAGGCTCTCTGCCGGTCTCCCAGCCTCGGAACACTGCACAAGAAACCGCAGCATCTTCCCGCTACAGATATTAAGTTTGTTTCGTCTTTCATGCCTAACAGCGCGGAAACGTCCAGGGATTTCTAGTCtggttttcttttaacagcatGCCGGCATCATGAGCTCCACATGCACGAGTTACAGCAGCGGAGAGAGGGGCTTCGTGAAGGGCTTCTCCTGTCCCTCCTCGGACGGTAACGCCGGGGCTGTGTTCTGCTGTGGATTCAACGACATGAAGTACTGCTGCGATGATCCCAACAGCTTTTTCCCTTATGAATACGGATATATGTGGTGGCTCAGggGATTCAAACCTGCAACCTTAAGTTTCGGAGCTCTGTTGGGTCTCTCCATAGCAGCTGTGGTCTTGTTGGTCTTCGTCATCACCGTGTGTGTCTTCTGCTACCTCTTCATCGTCACCAAACCCGGTCGCAGGGACGACGGCCTCAACCTTAGTGCGCCAGGATCTGATTTAGCATCTGAGGCCAGGCCTACTGGACCGAGCGACTACCTCAGCCGCAAAGACTGACCCTGAGCGGCTCTTTCAGCGCTGCTTGACCACAGCTGTTACCAGAACCGAGACAGGCCGTCATGGGAGTTAATGTGGTTCCGATCACATGTTTGGTCATGGCAATGTCTGCACATGAATGTCTGACGACACAAGACGACCAATCAACCGTTTCATCAGAGCTTCCAGTGAAAAGTACTACAGATGGACCAAACGACTCATCGGGAATCACTGAAGCCCactccgcttggcccaccgtgCTCGGTGCATTGACAGCAGTGCTGTCCATCGGTCTCCTGATAGCACTGGCCGTGAGGTACCGCTTCTTCCGATGGTGCCTGACCAGAAACAATCACGCTTTATTATTGGAGGGTGAAACGGCCAGTCAGTTCAGCCAGGCTGGAGATCTGGAGGGAGAGATCCCAGTGCGTGGCATGAGGGGCAGAATGATCCGGCGTGGAGAAAGTTCAGATGAGAATGAAGACGACGATGGCTTCATCGAGGACAACTACATCCAGgcgaatgagagagagaaagcagaggaagaggaatTCCAGCAGGAAGATACTGAAGACAGCGATGATGAACTGGTCATTCCAGACATTATATACATTGACTGATTTTCTGTACGTCTCCACTGTGGATATAAAGTCTGGAATCACtatgacagtttggactcttgtATTTCTATTAGATGATGTTCTTCGGAAGTCTTTGAAGGAATATTCTGGTTGTAGAAAAAGTTAAGTTTAATCTTCAGCATTTGTGGCATCCTTTACTTAAAAGGTTATAGAGGAGCTCACAATGGACGTGAATGGAGCCAATccgtaaatgtaaaaatactaaaCACTGTACAGCCACAAATGAGCATGAATCAAgctcaaaaatgattaaattctggaaaaaaatcaCTAACCATTCTGCTTATGcccataattaaaaatgaaaataaaatgatttaaacagctttacagaacaaataatacacatatattattttaatacaagaatttttaattaattgaagtaattattataattgaagtaattattattattttgctaataATATTTACACCACAAATGCTGTTGATTGAGCTTGACTTGGATATAAACccttaatattcatttaagaCATTCAAGGGCTGAATCTAATGGGTTTTGCATACATGTCTTATGATCACAGTTTACACAACAGCTCAACATCTCAAACTTATGAAAATTAATCCATCCATAATAATTGTTAACTGTACTTATTACTTTTGTGGCTTtttctttgaatgttttttctaaatgtCTGAGTCtgtcttaaaaatgtatcttatcTTTAATactccagcaaaaaaaaaaaaaaataattgaagaAACATGcttatgtacatatatttcaCCGCCTAGCATGAAATTAGCACAACATTGTATTAGgtgaattaatacaattatgtaGAGCTCATGACTATATTACACATATACCGCTTACTTTGAATGCAGCTGTATAGACTCTATCATAGATTTCATCAGCAATTGTGGATACTCGGTCATTCAACAAATATAATAACTGTGTATAGAAATAACTGTTGCCAGTTTTTAGCGCCAACTATAGACAGCTGCGTAGACTTCAAGTTAACAACTTCACTTCGAGTCAAGAGACTATGCTTACTTTTTGCCACAGACACAGTGCAAGTTGTATGCCAGTGTGCTAGAAGTTTCTGTTCAATCATCAGATTGGAAATACACGGTGAAGTTGAacgcaatgcattctgggatatgGTATTCAAAAGAGTGAACTTTGCTGTACATTGTGCATTCATTCCAGGTGTTCAATTCAAGATTAATTTCCATACAGTTACGAAATATTCGTTTTGATTCCAACTATAAGGTCCATTGACAGAAGCTCATTAAAACCACAcgtaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252239.1 lncRNA upstream 90545 1947128 ~ 1948362 (+) True LOC122355709
TU12886 lncRNA upstream 102148 1935914 ~ 1936759 (+) False arl14
XR_006253155.1 lncRNA upstream 109340 1925860 ~ 1929567 (+) True LOC122362698
TU12891 lncRNA upstream 116684 1919412 ~ 1922223 (+) True G8586
TU12890 lncRNA upstream 119594 1918706 ~ 1919313 (+) True G8585
TU13006 lncRNA downstream 1185 2053311 ~ 2055730 (+) True G8670
TU13034 lncRNA downstream 118470 2170596 ~ 2170820 (+) True G8691
TU13035 lncRNA downstream 135231 2187357 ~ 2191448 (+) False LOC122358138
TU13045 lncRNA downstream 159627 2211753 ~ 2212073 (+) True G8700
TU13046 lncRNA downstream 160132 2212258 ~ 2212609 (+) True G8701
XM_043257091.1 mRNA upstream 21876 2005196 ~ 2017031 (+) True scp2a
XM_043257142.1 mRNA upstream 34494 2002091 ~ 2004413 (+) False czib
XM_043257160.1 mRNA upstream 34494 2002128 ~ 2004413 (+) False czib
XM_043257151.1 mRNA upstream 34494 2002149 ~ 2004413 (+) True czib
XM_043260653.1 mRNA upstream 37472 1997438 ~ 2001435 (+) True uck2b
XM_043253397.1 mRNA downstream 20644 2072770 ~ 2076037 (+) True ebna1bp2
XM_043221458.1 mRNA downstream 31549 2083675 ~ 2156239 (+) True LOC122326519
XM_043221475.1 mRNA downstream 31549 2083675 ~ 2156239 (+) False LOC122326519
XM_043221484.1 mRNA downstream 31549 2083675 ~ 2156239 (+) False LOC122326519
XM_043221465.1 mRNA downstream 31549 2083675 ~ 2156239 (+) False LOC122326519
XR_006252350.1 other upstream 484793 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1210698 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1588888 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1588888 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1815864 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 126640 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 126640 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 218555 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 346828 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 359039 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile