RNA id: XM_043257289.1


Basic Information

Item Value
RNA id XM_043257289.1
length 3861
RNA type mRNA
GC content 0.49
exon number 24
gene id usp33
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 974125 ~ 995748 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTGAAAACCCGCCGTCTGCAAACCGAAGAAGCCTACAGATAATATGTAGCTGACAAGACGAAAGACGTTTTCTTCATCAGCAGATCAAGCAGCGATAATCGATTCACGTTGTACACCGTCGTTGATTTCCCGAGAGCGAGCGATGTCTGGAGCTTCAAGCAATGATTGTCCACACTTGGAGTGTGTGGGGGAGATCACCAAGGAAGAACTCATCCAGAAGTCTCATggTCAGTGTCAGGACTGCAAAGTCGGGGGACCAAACCTTTGGGCTTGTCTAGAGAATGGCTGTTCATATGTTGGCTGTGGGGAATCACATGAGGACCACAGCACCGTCCACTCTCAGGAAACGCGGCACAACCTGACGGTGAATCTGACCACTTTGAGAGTGTGGTGCTACGCCTGTACTAAGGAGGTTTTCCTGGAAAGAAAACTGGGTCCACACGCACAATTGCCCAGCGTTGCCAAGCCCATCTCCCCAGTACAGACTCCCAGCCCGGAGCCCAAAGCTCCTGGCAGTCCCACCTCACTGAGAGTTCCTCCAGCAGGAACCTGTGATGACCTGGATATGGAAACTGAGGAGGAGGACGAACTGAGGACCAGAGGTCTCACTGGACTGAAGAACATTGGCAATACCTGCTACATGAACGCAGCTCTCCAGGCGCTTTCAAACTGTCCTCCACTGACGCAGTtttttctggactgtggtggtCTGGTGAAGACAGACAAAAAGCCAGCGCTATGCAAAAGCTATCAGAAACTCATCACAGATCTTTGGCACAAAAACAGGAACTCCTATGTTGTTCCTACAAATCTATTCCAGGGCATTAAGGCCGTAAACCCAATGTTTCGTGGTTATTCCCAACAGGACTCCCAGGAGTTCCTGCGTTGTCTGATGGACCAACTTCACGAGGAGCTCAAAGAGCCCATTCCTGAACCCGAGGACCCAAACCAGGCTGTGGCCATGGATGACAGTCCCGACGAGGAAAaccacagccaatcagatgacTTCCAGTCCTGCGAGTCTTGCGGCAGCAGCGACCGTGCTGATAGCGAAGGCCCCAGAGTCCCAGAAGACATCAATGAAGCTGAGATGCTGATTTCAGAGCAGAACCAAAACAACAGAGACTGGCAGAAAGAGAAGAATCTTATCAACAATCTGTACCGTGCCGGTTCCCATGGCGACCTGGATAAAGATGTGGACACAACCAATGAGTCAAGGCCAATTATCAGCAGCCAAGGAGCCATTAAAGCACAGGGCCGAAATTCTGATTCAAACCCTGAAATCCAGGTCAGCAGTTCCATCAGACCACACAGTCCCAGTGGAAATGAGGGCGTCGCATCTAGACTGTCCAGCAGTCCCCCCAAATCCTCAATGTGGCAAAACCTGAGTGCTACTCACAAGAAAGTACCCTCGTTCACCCCACCAAAGAGCAAGCGGCAGAGGAAATATCACAGCATCATCTCTGAAGTGTTCGACGGCACCATTGTCAGCTCAGTTCAGTGCCTGACCTGTGACAGGGTTTCGGTGACTTTGGAGAACTTCCAGGACATCTCTCTGCCCATCCCAGGGAAAGAGGACCTCGCCAAGCTGCACTCTTCCTCCCACCAGACGGCTCTAGTCAAGGCTGGTTCGTGTGGAGAAGCCTACGCCCCTCAAGGCTGGATTGCTTTCGACATGGAATATATCAAGAGTTGGTTCTGGGGGCCTGTGGTCACGCTGCAGGACTGTCTGGCTGCCTTTTTTGCAAGGGATGAACTaaaagGCGACAACATGTACAGCTGTGAAAAATGCAAGAAGTTACGGAATGGCGTCAAATTCTGCAAAGTTCAGAGTTTACCAGAGATTCTGTGCATTCACCTCAAGCGCTTCAGACATGAACTTATGTTCTCCACCAAAATCAGCACTCATGTGTCCTTCCCTTTGGAAGGCCTCGAAATGCAGCCCTTCCTGGCCAAGGACTGCCCCGCCCAGACCACCACCTATGACCTGCTGTCAGTCATCTGTCACCACGGCACTGCCAGCAGTGGCCACTATATTGCCTATTGTCGGAACGAGCTGAACCAGCTGTGGTACGAGTTTGACGACCAGAGCGTTACGGAGGTGTCTGAGTCCTGTGTTCAAAACGCTGAGGCATATGTGCTCTTTTACAAGAAGAGCAACGAAGAGACTCAGAAGGAGAGGCGGAAGGTGACCAGTCTGCTCAACATGATGGAGCCAAGCCTCCTGCAGTTCTACATCTCCCGCCAGTGGCTGAACAAGTTCAAAACCTTCGCTGAGCCAGGACCCATCTCCAACCATGACTTCCTGTGTACCCACGGAGGAATTCCACCAAATAAAGCCTCATCCGTTGATGATCTTGTTATGATGCTTCCCCAAAATGTATGGGACCATCTGTATAGCAGGTACGGAGGCGGCCCGGCTGTCAATCACTTGTATGTCTGCCACACCTGCCAGAACGAGATCGAGAAGCTGGAAAAACGGCGCAAGAATGAGCTGGACATGTTTGTTCGGCTCAATAAGGCATTTCAGGAGGAGGAGTCTCCTGTGGTGATATACTGTATCAGCATGCAGTGGTTCCGGGAATGGGAAGGCTTTGTCAAAGGCAAGGACATCGACCTGCCAGGACCAATTGACAACTCCAAGattgctgtaaataaaaatggacaCATCACATTAAAACCAGGTGCCGATTCGGGTCAGATATCTGAAGAGACCTGGAACTTCCTCCATTCCATTCACGGGGGAGGGCCGGTGGTGACCGTGCGGCCCAGTGTCAGCCATCAGGAGGCCGAAACTTCCCAGGCAGAGGAGAAGATCGAAGTGGAGACGCGCTCGGTGTAGTGGTGCTTTGATGCTGCTGGAACGCAAGGGGACCTAGAAACACTTATTATTTTGCACTTCACTCTCGTTTTCAAGCATTCGAGCAAGGACCTTACGGCTTCACCTCAGCATACACGCTCTCTATACCCGTCACGACTGTTCTTTATAGCAGACGGATGGATTAAACGTCCTCCAGTGtgctttatatttgtatatatcgTGCATATCCATTTCCTCATGACACTAGAAGCCAATTAGATTTAAGACACAGTTTCACAGTCCATTAATGCATTTGATTTCTATGTGCAGCTGCGTTCATGACAGATTTCGCTTTGCCCAACAAACGGCCCATGATTTGTGTACAAATCAATGAATTCCACTGCATCTGTAGATCATTTTGGAGGCACTGCCTCGATTAAGAATACGAAAGAATATGTCGTCTTAGTGGATGAAAACTTCGTGTTTTGGGTATGAAGGGATACGAAATGCTACGTAGTCTCAGGAaaggacatttttgttttgcactgTACTGTAGATTCAAAAGCGTGCATGCTTCAGCTCTGATGTTCGATATGTATTTGAATGTACTAGTACTTAAAGAACACGCGTTCCTGcactaaatgttatttattccagGGGGTATGATTATTCTGCCATTCATGGACGTTTTCTTTGTTCGATAATAATTCGACGAGCTGAATCTAAGCAGAATGCACGCTAATAGGAATGACGTGGCACATTATGCTGGCAAGAAAATCAATTCCCCGTTTTTATTTGCGTTGCATAGCTGTGCCGCTGGGTTGCAAGGAGATGCAAACAATAAGGCGCACATTCGAACACATCGATGGCTGTCTCGTTTTAAAACGCTAtgtaaaagaaacaaatcagaTCAATTAAACCCTGCTGCCTCACACGTGTACATTCAAggcattatttaatgtatagaAGGATGTGATGTcgttttttcaatattaattgTCTGCAGAGATGAAAGCTGTATCTGAGTGGCTActattaaatctgaaagttatGCTGTC

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016477 cell migration biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0051298 centrosome duplication biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007411 axon guidance biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12488 lncRNA downstream 197167 774259 ~ 776958 (-) True G8309
TU12474 lncRNA downstream 279755 693580 ~ 694370 (-) True G8296
TU12449 lncRNA downstream 336335 637096 ~ 637790 (-) False G8280
TU12444 lncRNA downstream 338284 634849 ~ 635841 (-) False G8279
TU12454 lncRNA downstream 344634 628598 ~ 629491 (-) True G8280
TU12565 lncRNA upstream 2621 998369 ~ 999161 (-) True G8375
TU12568 lncRNA upstream 3071 998819 ~ 999689 (-) False G8375
TU12578 lncRNA upstream 46997 1042745 ~ 1042950 (-) True G8385
TU12579 lncRNA upstream 50842 1046590 ~ 1046907 (-) True G8386
TU12635 lncRNA upstream 252428 1248176 ~ 1248590 (-) True G8415
XM_043257317.1 mRNA downstream 782 953716 ~ 973343 (-) False zzz3
XM_043257300.1 mRNA downstream 782 953716 ~ 973343 (-) False zzz3
XM_043257309.1 mRNA downstream 1225 953716 ~ 972900 (-) True zzz3
XM_043261618.1 mRNA downstream 98898 843215 ~ 875227 (-) True pigk
XM_043254355.1 mRNA downstream 289112 680675 ~ 685013 (-) True dnajb4
XM_043257365.1 mRNA upstream 10841 1006589 ~ 1015386 (-) False fubp1
XM_043257340.1 mRNA upstream 10841 1006589 ~ 1015386 (-) False fubp1
XM_043257348.1 mRNA upstream 10841 1006589 ~ 1015386 (-) False fubp1
XM_043257330.1 mRNA upstream 10841 1006589 ~ 1015386 (-) True fubp1
XM_043257356.1 mRNA upstream 10841 1006589 ~ 1015385 (-) False fubp1
TU12372 other downstream 750191 198628 ~ 223934 (-) False G8237
TU12376 other downstream 750980 214738 ~ 223145 (-) False G8237
TU12374 other downstream 822495 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 184197 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 387960 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 388342 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 388949 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 389349 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile