RNA id: XM_043257317.1


Basic Information

Item Value
RNA id XM_043257317.1
length 4117
RNA type mRNA
GC content 0.53
exon number 11
gene id zzz3
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 953716 ~ 973343 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCATTATGAAAGCAGCGAGCGTGTGGGCCGCGGCTGCTGTCCTGTACAGTATCGCAGTGAGCGGGATTGTGGGATTCACATTCACAGCAGAAccgagagagggaaaaaaacatggcGGCTGCCGAATGTGCAGCAAACGATTTGCGGAAGTGAGGTGCCCACATTCTGCTGCTGAGGAGAGAGCACCACGATGAGGAGACAGTAGGCACCCACCATAGTATGGCCGCATCCCGCTCTTCGCGCGTCACAAGATCATCAGTGGGGATAAATGGATTGGATGAGAACTTTTGTGGTCGAACCCTCAGGAACCGCAGCATCGCCCAGCCGGAAGAGAGCTCTCCGCCTCCTGTGCCCAGAGCCCGCTCACCCAAGAAGAAGCAGGACTGTCAGCAGCACCAGCAGACCGGAGCACAGGTCGGAAAGGTAGCCGAGAACAAGGCAGAGGGTGAACCGGTGCCATCCTACGGAAAGCGAGGCTTGCCGAGCTCCGAGAAGGACGAGTCGGATAAATCGGACAACTGCGAGCGTCCTAGGGCCGGGGGTGGGCCAGAAGCCTCCCCAGCCCTGAAGAGGGCCAAGCGCTGCCCTCGCTCAGGTGAATCGCAGGGGGTTGAGGAGGAACCTTCTCTCAAACCAGAGAGCCCTGATCCCGCTGCCCCGAAGGAAAATGACGAGGGCGCCAAAACAAACGTGTCCTCGGACCCTCCGCTCAGCCTCGACAAAGAGGCAGAGCAGAAACAGGATGGCCCGGTGGTGGAGATCGCCTCTCCGCCGCAGGCCGGCGAGAACGTCAAGGCCACCAACGGCCTTGCTGAACTCCATAAGGAGGACTCAGAAGCTGCAGCCTTACCCCCGGAGCCCTGTGCCTCCCCTGCCACGCTTAACAACAGTCCTTCACTGTTAAATGGCAGCCAGGCTGCACCCTCATCTCCCGACCCTATCGTGCCTTGTAGTTCCCCTCATCCCAAGCAAGCCAATGAGTCCGACAGCCCTCAGATTGACTGTGAGAGAAACTGCACGACCGAGGAAGCTGCCGAGGCCGTGCTGTCCCGGGAACCCGAGATGGAGGTAGAGGTGGACGTTGTTGGGGATGCCGCCCAGGCTCAGGACGAGCTCGCAAGAGAGGAGAGCACCAACGGCGGCTTTCAGGCTGATCCGCAGGACCCTTCTGATAACTGCTCGAATATCTCAGGAGAAACGGTGGTGCTGACTGCCTCCCAGCTGCCTGCGGAGCCCCCCTCCTTCACAGAGCCTCAAGAACACAGATACACCCTGAGGACTTCACCGCGCCGCGCTGCCTTTGGTAGTGGGCTCAAAGCCAGCTCCCCCAAACCCAGTTCCCCGCACATAGACAATGGTTCGCTGAAGGAGGAGTCCACGCCGGTTCCTCTTTCCTCTGAGGACACCAGCCATAAAGACCTTCACCATCATGCACTGGGGTTTTCTAGCAAGGCAGACAATGAACTCTCAGAGAAAGCAGGGGTCAGTGGAGAGGTCGGAGTGTCAGATAGTAGAGTTTCGAGATCCACCAAAGAGCTGCTGGCCACTCAGGctgaggaagatgaagaggaagaggaggatccGGATGTCTACTATTTTGAGTCTGATCACTTGGCTCTCAAACACAACAAAGATTATCAGAGGTTGCTCCAGACCATCAGTGTACTGGAGGCCCAGCGAACCCAAGCCATCCTGGACCTGGAGACACTGGCACGGCATCAGAAGGAAGCCCTGTCTGACCCCATCGTCTTTGTGGACCAGCTACAGAAACGGGTGGAGATGGGTCTGCCTCGGCCTCAGAGAGTAGTCCAGCTCCCGGACATTGCATGGGACCAATACACCTCAGGCCGTGGTGACTTTGAACGGGAGTTCTGTGACAAGAAGCGCAAAACACGACAGTTGCAGTTAATCTTTGACAAAGTGGGGTTGCCTGCTCGACCAAAAAGTCCTGTGGATTCCAAGAAGGAGGGTGACTCCTCATCTGTCTACTCCTCCTCCCTGCCGTCAAGTGACGGTCCAGAACACAGCATGTCCAGTAGCAGAGCTCAGATGATTAGAGGGAGGCTGTACAACCAGAACAAACCCGACACCTTCAACCAGCTGTGGACTGTTGAAGAGCAGGTTGCTAGCAgggtacagaaatattttataaaactgaCAAAGGCTGGTATACCAGTGCCAGGCAGGACACCCAATGTGTGCATGTACAGTAAAAAGGCCTCTAGTAAGCGACAGCACCACCTCAATAAACACCTGTACAGGCCCTCGACATTCCTCACCTCGTACGAGCCGCCAGTCTACATGGATGATGAGGACGAGCGCTCCCACTTCTTCAACAGCCTCCAGGATAATGGAGCGGATGATTCGGATGAGGAAGGGGTTCCAGTGGAGCTGAGGCACCTGCCGGAGTATAAGGAGCTACTGGAGCTGAAGAAACTAAAGAAACAGAAACTACAGGAGATCCAGGCTGAGAGCGCTCTCACGCAGCACGTTGGCTATAAGTGTGACATGTGTGGCATGGAGCCCATCCAGGGAGTACGGTGGCACTGTCAGGACTGTCCGCAGGACAACGCTGTGGACTTCTGCAGTTCCTGCTCTGACTGTTTGTTCAAAACGGAGACCCACAAGCCCACACACAGACTAGAGCCGGTCTGCCAGGCCGAAACCTTCCTGGACAAAGACTACTGCTTACCGCAGAGCACAGGCTACAACTACCTGGACCCCAACTACTTCCCTGCCAACAGATGACAGGGACGAGCTCCAGCGCTAGTATCCAGGGCTGGGCCGCAGCCTCCAGGGCATTCTGTGCATGGCTCCATCATCCAAGTCAAAGAGGGTACAGCAGATGGGCCGCACCTCGCCCCGACCCGCTGCCGGAGGGGGGTGGGGTTGGGGAGGGTTGTCAAACCTTACCAGGTCTCGTCAAGTAACACTATCTCAAATCAAAAGAAACGAGAGGGAAGAACGAACAAAAGAAAAGGCGCACCGACATTCCCAGTCCCAGGACATTTAGAAGGCAACCCGACGCTTCCCTTTCGCTCCGCCGTTTGAGTGACAGGCCTCTCGGAGGAGCGCGCGGCGGCTCTCGATCCATCGGCCGGAGCGGGGTTGGGCTCGCGTTAAAGTGCAAAATGTCGTCTGtagttgaaatatttataagtGAAGCTTTGTGTGTGAGCTCTTTTCGTGAGGCGGGAGTACAAGGAAAAGGAACTTGGTGCTGAGACCGTCGTCTTCGATCCATAACCAGGTTTTTAACCAATCGAGGAGGTTCGCTCGCAACTCCGACGTTCTAAACAGgggttaaaacaaaaaacgaaaaacaTAAAATCCACCCCCACCCCCCCCCCATACGTGTCTCTTGCCATGGGCTACCATTTTCACTAGAAGCTGCTCTTTGTTTCCTCTTACGACCGTTACATGATGTTGTCACTTTATTTACgttcatttcttgttttttaaattacgccgaattaaaaaaaaaaaaaaaaagccactccACTTAACCCGATAGGTTTCCAAACCTCAAAGCACTACAGCACGGAGAAGACCAGCTGAGATCTGGAAGGCGTTATAGCGCTCGTGGAgagctttcttttcttttctcaatgTGTACTGTTGTTGATCATGTGGAGTAATCAAATATATGGTGAAAAGTAGCCAGTGGTAGTTGCCgtgtgccattttttttttttttcttccctgtcCAGTCGATCGAAACCTGGCCACTTGttttagaagaagaaaataaagaacTCGTGGCACGTTTGCCCTCTGTGAAAAACTGCCCGACCATCGTCACGCCTTTAGATCCCTCTAATTTTCGCAGTTTCCGCACGGTCCATGaaaagattgtatttttattaatctatttaaaaagACGAAGAATAACAAAATCGATTTGGTGGTAGTCGCCGCACTCCCACGTTAttttatacacatgcattttGTTGTGCTTTGAGTAGACCATTTTGTATTGGGTTCTGTTCTGTTCACCTCCCCTCCCTTGACCCGCTTCAATATCTGTGTATAACAGTCTGTtcttaaataatgtaaaaaaaaaaaatgttagaggAGAACTGTGGAAATAAAAGTATGTGAAAAGTCTTTCTACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12488 lncRNA downstream 176758 774259 ~ 776958 (-) True G8309
TU12474 lncRNA downstream 259346 693580 ~ 694370 (-) True G8296
TU12449 lncRNA downstream 315926 637096 ~ 637790 (-) False G8280
TU12444 lncRNA downstream 317875 634849 ~ 635841 (-) False G8279
TU12454 lncRNA downstream 324225 628598 ~ 629491 (-) True G8280
TU12565 lncRNA upstream 25026 998369 ~ 999161 (-) True G8375
TU12568 lncRNA upstream 25476 998819 ~ 999689 (-) False G8375
TU12578 lncRNA upstream 69402 1042745 ~ 1042950 (-) True G8385
TU12579 lncRNA upstream 73247 1046590 ~ 1046907 (-) True G8386
TU12635 lncRNA upstream 274833 1248176 ~ 1248590 (-) True G8415
XM_043261618.1 mRNA downstream 78489 843215 ~ 875227 (-) True pigk
XM_043254355.1 mRNA downstream 268703 680675 ~ 685013 (-) True dnajb4
XM_043254365.1 mRNA downstream 273333 668300 ~ 680383 (-) True gipc2
XM_043220108.1 mRNA downstream 349772 601914 ~ 603944 (-) False LOC122325167
XM_043219978.1 mRNA downstream 352482 597212 ~ 601234 (-) True LOC122325090
XM_043257289.1 mRNA upstream 782 974125 ~ 995748 (-) True usp33
XM_043257365.1 mRNA upstream 33246 1006589 ~ 1015386 (-) False fubp1
XM_043257340.1 mRNA upstream 33246 1006589 ~ 1015386 (-) False fubp1
XM_043257348.1 mRNA upstream 33246 1006589 ~ 1015386 (-) False fubp1
XM_043257330.1 mRNA upstream 33246 1006589 ~ 1015386 (-) True fubp1
TU12372 other downstream 729782 198628 ~ 223934 (-) False G8237
TU12376 other downstream 730571 214738 ~ 223145 (-) False G8237
TU12374 other downstream 802086 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 206602 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 410365 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 410747 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 411354 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 411754 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile