RNA id: XM_043257348.1


Basic Information

Item Value
RNA id XM_043257348.1
length 5110
RNA type mRNA
GC content 0.43
exon number 20
gene id fubp1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1006589 ~ 1015386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCAGTCAGTTTCCTTCATCACTCTCGCGCGTACGGCCATCTTCCTTCAGCTCGAGAAGATAGTTTCTGCAGTCATGGCCGACTACTCTAGCGTGGCTCCACCGTCCTCAAACGCCGGTGGAGGAATGAACGATGCTTTTAAAGACGCCCTTCAGAGAGCCAGACAAATTGCTGCAAAAATAGGAGGTGATGGTGTACCCCCCTCTCCAGTATCCAATGAGTTTGGTTATGGAGGACAGAAAAGACCTCTTGAAGATGGCGATCAACCAGAAACAAAGAAGGTTCCACCAAGCGATCCTTTTTCATCTGTAATGGGAGGCATGGGTGGCCCACCAAGGACCTTATCAGAGGAGTTCAAGGTTCCTGATGGCATGGTTGGCTTCATAATTGGAAGGGGAGGAGAACAGATTTCAAGAATACAACAGGACTCAGGTTGCAAAATACAGATTGCTCCTGACAGTGGTGGCATGCCTGAGAGGTCAGTGACATTAACGGGCTCACCTGATTCAATCCAGACTGCAAAGAGGTTGCTCTCAGAGATTGTAGAGAAAGGTAGACCATCTCCAGCATTCCACCACAATGATGGACCAGGGATGTCTGTTCAGGAGATGATGATCCCTGCCTCCAAAGCTGGTCTGGTCATCGGAAAAGGAGGAGAAACTATCAAACAGTTACAGGAACGTGCAGGGGTCAAAATGGTCATGATTCAAGATGGACCCCAAAATACAGGGGCTGATAAACCACTTCGAATCTCTGGCGATCCTTTTAAAGTCCAgCAAGCTAAAGACATGGTGATGGATCTGATCCGAGATCAGGGTTTCCGGGAACAGAGAGGAGAGTATGGTTCTAGAGTGGGCGGTGGAGACAGTCTGGATGTTCCCGTGCCAAGGTTTGCAGTGGGGATTGTGATTGGCAGGAATGGTGAAATGATCAAGAAGATTCAGAATGACACTGGTGTGAGGATTCAGTTCAAACCAGATGATGGCTCCACACCAGAGAGGATCGCTCAGATTATGGGGCCTCCAGACAGGTCACAGCATGCAGCAGATATCATATCTGACCTGCTGAGAAGTGTGCAGGCCGGGGGCCCCCCTGGTCACGGGGGCAGAGGGAGGGGCCGTGGACAGGGAAACTGGAACATGGGCCCTCCTGGAGGCCTGCAGGAATTCACTTTCACTGTGCCTACCATGAAGACAGGCCTCATTATTGGCAAAGgCGGTGAAACCATTAAGAACATCAGCCAGCAGTCAGGAGCCAGGATAGAGTTACAAAGAAACCCTCCACCTAATTCAGACCCTAATATAAAGATCTTTACAGTCCGTGGATCACCCCAACAGATTGATTACGCCAGACAGTTAGTCGAGGAAAAGATTGGAGGTCCAGTTAGCCCTATGGGTGGTCCTCATGGTCCTCCTGGGCCCCATGGAGGTCCTTCTCACGGCCCTCCCGGTCCACCAGGACCACCTGCTCCCATGGGCCCATACAACCCTGGGCCCTATGGTCAGGGCCCTCCTGGACCACATGGTCCCCCAGCACCATACCAGCCTCAAGGCTGGGGCAACGGATATCCTCATTGGCAGCAAGGACAGCCAGATCCCACAGATAAAGCTGCAGCTGATGCTAATGCTGCCGCATGGGCAGCCTATTATTCTCAGTACCAGCAGCAGCCCCAGGGCCCCATGACACCAACGTCGGCAGCCCCTGGCACATCCCAAACCAATGGACAAGGTGACCCGCAAGCTCCAGGTCAAAGTGGACAGGCAGATTACACCAAGGCCTGGGAGGAATATTACAAGAAATTGGGTCAAGGACAGCCTCAGCAGGACTACACAAAGGCATGGGAAGAGTACTATAAGAAACAAGgtcAAGCTGCACCTCAGGCGGCTGCAGCGGCAGCGGCGTCTCAGCCGGGAGGTCAGCCAGATTACAGTGCAGCGTGGGCAGAATACTACCGCCAGCAGGCAGCTTACTATGGCCAAGGCGCCCCTCAGGCGATGGGAGCTGCACCCCAGGCTCAGCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCAGAAAAAACCTTTGTTAAATGTTTGGATGCAGACGCCATGATGAAGATCTTTATTTCATTGGTTTGAGTGTTTAAGCTAGATCGCAGACCAGCTCCAAAGtcaagtataaatatatatatatataattttttcctttttgttttgccACTCTTGTAAATGAACGGTTTGTTTTTAGTCAGGTAATTTTGGTCATTCCAGCTCCTGTATCTCCTGTATTTCATGTAGTTCTGAGACTAAACTTTAGTCATTTTCCATGTAAATCATCTCAGTTTTAATATGATATGCCTGTTGTGTTttgcaataaaacaatgaaacctCCTGTGTTGGTAAGTGGGGTGCAAAAGTGgggaatgttttgtaaaaatttaatttcctgTTTTGGATATTGGGGGTGGTATGCAGATTTCCGGAACAAAAATGttgctcttgtttttttttttttttagtttttttttttcttctttcaactGTCTTATTACCCTTGATTTTTAGTTTGATTCCTGGTCTATTTTAAAGTCACAAGTAAGAGATCATTGATCATTTGACATTGCTTGTTTGACACATGGACAGCTCTGTTTttatgctgcattttttttaactggtcATTGCTGTGGATGTAGGTGTAGGCAGGTTATCTAAGGCAAGGTGGCTTGGTGTTGGCAAGGTATGTGACTCATGCAATAACTCTTCAGTGCTGTAGTGTTGCTCATTCTTGTATTGCATTTTTACCTGGTTTGTTGAGGTAGTGTGCACTGTTAATGAGAGACATTTCCTCCCTCACAGGCAAGATTAGGAAGGCGGTAAGCAAGTATGCGTCTTTACATAAACTGTTCCTTTTTATATTGTGACTGCGATCATGTTGCAAGTATTTTAGTTTGTTCTCCAAGTTTGCTGCTTTTTTACAGGGCAGGTCAAGTGTTCTGATCAACAGTTATGTCTTGCGAAATTACTTGTCCCCATCCTATATTTTACATGTCTAAAATCGacaaattgtgtatatatttctacCAATATTGCTGgcattttaaaaaccattttgaTACGATTAAAAAAAGCTCGAATGCGAACATGGACTACTTTTTTGTCTGCCCCATTGTCTAAGCATTCCTCCAATATAGGCCTATAGGTTTTTGGAGACTCTGGCCTCCTTCACCAGTGAAATGAGCTCTCCACTGTAAGTACAAAATGTACATGATTTTGCGGCCCAATTTGTTTTTTGCTGTCAATGCATTGTCTTTGACCGAATGAAACGCAATGTATATAAATCGCTAAATGTTGCCCTTTTTTGGGTAAGTATGTCAGGGCTGTAATTTTGATTTGACATGTTCAAGATAATAATGACCTGACCCTATTTCACATTGGACTGTTACTTTTTTTGCCATAACAGCATTGTGTGATATTTACAAATTGAGACATTGCCATGTTGACACCTGCTTTAGTCATTTAAGACTTGTCTCTCAGACTTCTCCTATGAAACTGTGAACTGTACCACTGTGCTCAAGTCAGTCCGTCTGTAGGCACGGCAACTTTTTCCATCTGCGAATGTGTGGTTTAACATTGACTAGACATGTAAATTGTCTTTTTGTGAATTGACAAGTGTTTCATATGCTGCATAGCCCATTAAGACCGTCAGCAAATGGCCTCTTTCAAATGTTAATTAGTATTAATGTCCTATTTCTAAATCTGTGCCTGACCTGTTTGTGATTAAGGTCATTGAGGCTGTCGATTTgatgcaagttttttttatttcgacTGTTCATTAGTGAGCAGTGCAATGTCTAATCTTGCAGTGTCATCCCTGACCTTGCACCTTAGGTTCTGCAGCAATAACACAGGTAAGAGTATCCTAAGAAATTGAACCTGTGATCTAGTGTAATGCTTTTCACCTTTGAAACTGAGGTCAATTTGTGCCGCTGTTTAAATGAAGGATGTCTCTCATAGTAGATAGACTGACGTACATCACATGTCAGAATTAAGATCTCTTAGACgtatgtattctttttttttttccatatgaaTTGCATGGCCTTGACCTGTAGTTCACAAATGTTTTCCTCTGTTGAAATCTAACTagaattatgctttttttttttttttttctaattgaaACAAATGTGATTTTGATTTGCTCATTTGTTAGCTTCCTGGTAAGTCTGTTTAGTGTGGTTCTGTTCTACTCTTACACAATGCATGCAGATGCAAAATGATCCAGAGTTAGCTCTATGAATGCACTCACTGATAAATGAcgtatactgtatgtatgctCATGTTTCATTGGTTTGCAAGCTTTCTTGTTGCCCCTCTGTAGTGCTAATGTTTGTCCCACATTGCTGCCTTCATTCTCACTCACAGTGTTGAAGATGCTGCAGGCGTAGTTCGTAGAATCAGGTCCTGAGCTAGTTTGTCCGTAAGGAGGAATCCTTTGAGTCTGTCCCTCCGCTGAACGTAGACTGTTCAAGGGCTCCAATTATAAGGTAAAAACAAAATCCTGAGGAATCTGTCATTGCAAAGTCAATGTTATTGTTAGTTTAGGGTGATGCCAGTTAGCTTTGATTATAGAAATGTAGTTATATGCCTCTGTATTATTGGTTGACTAATGGTtctatgaaatgttttgagtACATTCTTTGCCTTTTGTTGATAAGTGTAGGGATTTTATGTGCATCAATGCTGTACAGGTGGACCATGAccaggaactttttttttcttttcagtagaCATTTGCCAGgctggtttttgtttgttaaacaGAGTTGCTTTAAACCTAGTCTTTATCCATTGCTGCATATCGTTTTGTATGCATGCAAGATGTTTCCTTTGAGCAAATTGTTCACAACAGAATTCGTGGGGGTCTAAAAACGAAGAGAAAATCGGAGGCTATCTGAGAAATTTGGAGCATGCCTTTGAGGTAAAACTATCATGAACTGTTAAAAGTTGTTGAATGTAATTTTGATTTTTGCTGAAACTTGTTGGTCTGAAATGTTAAAGACTGTTGCCATTGTCATCAATAAAATTGTAATCATTAAAATTGgctttaagatttt

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12568 lncRNA downstream 6900 998819 ~ 999689 (-) False G8375
TU12565 lncRNA downstream 7428 998369 ~ 999161 (-) True G8375
TU12488 lncRNA downstream 229631 774259 ~ 776958 (-) True G8309
TU12474 lncRNA downstream 312219 693580 ~ 694370 (-) True G8296
TU12449 lncRNA downstream 368799 637096 ~ 637790 (-) False G8280
TU12578 lncRNA upstream 27359 1042745 ~ 1042950 (-) True G8385
TU12579 lncRNA upstream 31204 1046590 ~ 1046907 (-) True G8386
TU12635 lncRNA upstream 232790 1248176 ~ 1248590 (-) True G8415
TU12664 lncRNA upstream 294559 1309945 ~ 1310291 (-) True G8439
TU12668 lncRNA upstream 317459 1332845 ~ 1333104 (-) True G8443
XM_043257289.1 mRNA downstream 10841 974125 ~ 995748 (-) True usp33
XM_043257317.1 mRNA downstream 33246 953716 ~ 973343 (-) False zzz3
XM_043257300.1 mRNA downstream 33246 953716 ~ 973343 (-) False zzz3
XM_043257309.1 mRNA downstream 33689 953716 ~ 972900 (-) True zzz3
XM_043261618.1 mRNA downstream 131362 843215 ~ 875227 (-) True pigk
XM_043217129.1 mRNA upstream 165891 1181277 ~ 1202987 (-) False dipk2aa
XM_043217143.1 mRNA upstream 165891 1181277 ~ 1202987 (-) True dipk2aa
XM_043217170.1 mRNA upstream 165891 1181277 ~ 1202980 (-) False dipk2aa
XM_043217161.1 mRNA upstream 165891 1181277 ~ 1202719 (-) False dipk2aa
XM_043217154.1 mRNA upstream 165891 1181277 ~ 1200574 (-) False dipk2aa
TU12372 other downstream 782655 198628 ~ 223934 (-) False G8237
TU12376 other downstream 783444 214738 ~ 223145 (-) False G8237
TU12374 other downstream 854959 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 164559 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 368322 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 368704 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 369311 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 369711 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile