RNA id: XM_043257429.1


Basic Information

Item Value
RNA id XM_043257429.1
length 2455
RNA type mRNA
GC content 0.50
exon number 13
gene id ak5
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 875758 ~ 952394 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacgttgagTCAGTCGATCAGCGCGCGGGCAGCGTGCAGGTGTCTCGCGCTGTGTTGGCGGTTTCAAACACTGAAGAGAAACGTTAAGAGCGAGACCAGAGGAGAGCTTGGGAGCAGCATGTAACGGGCGCAGCCGTCTTCATCCACCCGGTTCAGTAGGCACTTGGAGAATGCGTTAAGATCGCGACAACATCACGGATCCGCGAACCTGCAACGCAATACATCCCACACTCAACGCAACAGGACCGATAGTTTTTCCCCCGACACGAAAATGAACACCAACGACGCGAAGGAATATCTCTCCAGAAGAGAGATACCTCAACTGTTTGAGAGTCTGCTGACCGGTCTGATGTACTACCGACCAGACGACCCCATAGACTATCTAGAGACCTGTCTTAAGAAAGTGAGGGAGCTCGGCGGGACTGACAAAGTTCGGTGGGACACGTTCGTCGGGCAGGAGAAGAAGTCGTTACCGCCTCTCAATGGTGGGCAGTCACGCCGATCTTTTTTCCGCAATGTTCTCCCGGACAGTCCCAATTTCCCCTATCGGAGATATGAACGCCTCCCACCCATCAACCAGTTTTCCATAGAGAGCGACTCAGACTTGTcagagactgctgagctcataGAGGAATATGAAGTGTTTGACCCATCTAGACCCAGACCCAAAGTCATCCTCATTATAGGTGGCCCAGGCAGCGGTAAAGGTACACAGTGTCTGAAGATCGCTGAGCGCTATGGCTTTGAATATGTCTCAGTGGGTGAGCTACTCAGGAAGAAGATGATCCATAATGCCACCAGCAACAGGAAATGGAGTCTGATTGCCAGGATCATCACCAATGGGGAACTGGCACCACAGGAAACAACCATAACCGAGATCAAGCAGAAGATCATGAAGATTCCAGAGGCCAGCGGTATAGTTATAGATGGCTTCCCTCGAGATGTGGGACAAGCTCTTTCTTTTGAAGACCAGATCTGTACTCCAGACCTGGTGGTGTTTCTGGCCTGCTCTAACCAGCGTCTGAAGGAGCGTCTGGAGAAGCGTGCGGAGCAGCAGGGTCGCCCAGATGATAACCCTAAAGCTATTGATCGACGCTTGACTAATTTCAAACAGAATGCCATCCCCTTGGTCAAATACTTTCAAGAAAAAGGCCTCATCGTCACACTTGATGCAGATCGAGATGAAGAGGAAGTCTTCTATGACATCAGCATGACAGTCGACAACAAACTGTACCCTACCAAAGAACCTGTGGCAGGACCCAGTGAGCTCGACCTTAGTTTGCTAGCAGACAGCAGCAGCCTTGCAGATGTTCCCACTAAATTTGATGAACAGACCGATGAAGAGGTGGCTGGATATGCAGAGGCGACTGGAGAAAGTTTTCCTGTGGAGACCAAGAAATCAAAGGTCATCTTTGTGATTGGTGGGCCGGGATCGGGGAAAGCTCTCCAATCGGAGAAGATAGAAGAGCGGTACAGTTTGAAGCGCCTCTGTCCCGGGGACATCCTGTGCAGCGAGTTGCAGTCTCACAGTGAGAGAGGACGATTTCTCCGAGACCTTTTGGAAAGAGGAGAGCAGCTTCCCGAGATGGGGCAGCCCGACATCGTTCTGTTCCTGGAATGTTCTGCAGACATCATGAGTCGAAGGCTGCAGCAGAGGGCCACCTGCAGCCTGCACACTAAAGAAGCCCGAGACCGAGACACTCGACGCAGAGTAGACGGATTCTGCAGCCTGGTCAATCTCGTGGTCAGTCACTACGAACACAGAGAGGTTCTGCACAAGaTTGATGCCGAGCAGCCCCCAGAAGATGTCTTTGAGCAGATCTGCCTCGTCTTGGACTCCTGCTAGAGAGCTTGGACTAGCACTGCCCCCTCGAGGACGAAACCGTCACTTGCAGCTCCACCGCAGATCGACTCGTATTACActcgcgctcacacacacacacacacacacacacctgtgatcACAGCTTCTGTATGGCACATCCTCTTGGAAAACTACCAACCAGCAACTGGCGCCCATTCATTTCACACCATTGTCGTTCACTGTAAATATCAGCACAATAAATCAACAGTGTTTATCTCTTGGTATCGAATCTATATGCTTAAGCTCGCTTTCGGCTccataaaacacacagaggGTTATTTACGGCAGTGCGCTGCGTTTGGACTTGTCGTTCAGTCAGTATCCCATGAGCACTGAAATCAGCAAAACTGATAAGCATGACGGACCGGCCGCTGGAGagcctttttatattttaacttcaTGCTTTATATCGTGCTAAGCGTGCATGGATAGTGATTCATTGTATAGTCGAAGCAGAAACTAATGAGATGGAGAAGGTCTGACTTTCACGGGTGCAACGAACGGATGAATTTCACAATGAAGTCTGATAACTGTATTCTTCTTTATCAACCAGAGtgaaataaagacatttcataTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12330 lncRNA upstream 93013 680687 ~ 782745 (+) True G8222
TU12329 lncRNA upstream 191565 680687 ~ 684193 (+) False G8222
TU12262 lncRNA upstream 204195 668304 ~ 671563 (+) True G8173
XR_006247819.1 lncRNA upstream 230832 643034 ~ 644926 (+) True LOC122328698
XR_006247267.1 lncRNA upstream 240992 634151 ~ 634766 (+) True LOC122325219
TU12606 lncRNA downstream 227736 1180130 ~ 1186032 (+) True G8394
TU12596 lncRNA downstream 245033 1197427 ~ 1203014 (+) True G8393
TU12676 lncRNA downstream 429725 1382119 ~ 1382323 (+) True G8451
TU12674 lncRNA downstream 431498 1383892 ~ 1385986 (+) True G8449
TU12694 lncRNA downstream 454594 1406988 ~ 1408710 (+) False ccdc39
XM_043256339.1 mRNA upstream 47353 799963 ~ 828405 (+) True st6galnac5a
XM_043224288.1 mRNA upstream 98958 706551 ~ 776800 (+) True st6galnac3
XM_043224296.1 mRNA upstream 98958 706551 ~ 776800 (+) False st6galnac3
XM_043224778.1 mRNA upstream 179094 693217 ~ 696664 (+) True cope
XM_043224784.1 mRNA upstream 179094 693235 ~ 696664 (+) False cope
XM_043257386.1 mRNA downstream 43443 995837 ~ 1006604 (+) False miga1
XM_043257378.1 mRNA downstream 44535 996929 ~ 1006604 (+) True miga1
XM_043257400.1 mRNA downstream 44535 996929 ~ 1006604 (+) False miga1
XM_043257393.1 mRNA downstream 44540 996934 ~ 1006604 (+) False miga1
XM_043256101.1 mRNA downstream 67353 1019747 ~ 1024763 (+) True si:ch211-71m22.3
TU12491 other upstream 47549 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 425739 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 425739 447162 ~ 450019 (+) False LOC122360757
TU12228 other upstream 652715 214409 ~ 223043 (+) False G8167
XR_006252350.1 other downstream 592379 1544773 ~ 1554114 (+) False rc3h1b
XR_006252584.1 other downstream 1226372 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 1226372 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 1318287 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 1446560 2398954 ~ 2401745 (+) True G8725

Expression Profile