RNA id: XM_043257920.1


Basic Information

Item Value
RNA id XM_043257920.1
length 2798
RNA type mRNA
GC content 0.51
exon number 15
gene id pde4bb
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2213103 ~ 2265525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTCAACAAACACACTCCTACAGCCATACCGCGGGATTCAAGGCTTTAACACACCACTGCGCATGACACTTCCTCATGGATTTAAAGCAAGATGCTGACATCTGTCCTGTCAGTCAGAGGATGGAGATGGGTTTGGACACGGACTGTCAGTCTGATGTGAAAGAGCTCGCAGCTGGTGCAAGAAACGCGCCTCAGAACTGCCCGGGCATGTTCAGAAAGCTGGTGGTGAATAAAACAGTCCGCCAACGCAGACGCTTCACAGTGGCCGTGTCTCATACCTGTTTGGAGGTGGAGAATGGCCCCTCCATCGGCTGTAGTCCACTGGACCTGCAGGCCTCACCGGGCTCTGGTTTGGTCCTTCATCCCAACATGGCCAGTCACGGTCAGCGGCGGGAGTCTTTCCTTTACCGCTCGGACAGCGACTACGACCTCTCTCCCAAATCCACCTCTCGCAACTCCTCGCTTGTTGGGGAGCAGCTACACGGTGAAGACCTGATTGTCACTCCTTTTGCTCAGGTGCTTGCAAGTCTTCGTACCGTTAGGAATAATTTCAGCATCCTGACAAATGTCCAGTGTCCCTCCAGCAAAAGATCACCAGTCAGCAGTCAACCGCCGGTGACCAAAGCCAACCTGTCAGATGAATCCTACCAGAAGCTGGCCGTGGAGACCATGGAGGAGCTAGACTGGTGCCTGGACCAGCTGGAGACCATCCAGACGTACCGCTCCGTCAGTGACATGGCCTCTAATAAGTTCAAGAGGATGTTGAATCGGGAGCTGACACATCTGTCTGAGATGAGTCGCTCTGGAAACCAGGTGTCTGAGTTCATCTCCAACACATTCTTAGATAAGCAGAATGAACTGGAGATCCCATCGCCCACTCCTAAATCGCGGGACAGGAAGAGGAGGCAGCAGCAGCTGATGACTCAGATCAGCGGCGTGAGGAAGGTCACGCACGGCCCGGGTCTGTCCGGCAGCTGCGGCACGGCTCGCTTCGGCGTCAAAACTGATTTGGAGGACTTGCTCTCAAAGGACCTGGAAGACATCAACAAATGGGGTCTGAACATCTTTAAAGTTTCAGAGCACTCTCACCATCGGCCGCTGACCTGCATCATGTATGCCATCTTTCAGGAGAGAGATCTAATGAAGACATTTAAGATCCCTGTGGATACCTTCGTGACGTACATGATGACCCTTGAAGATCACTACCACGCAGACGTGGCTTATCACAACAGTCTACACGCGGCCGACGTGGCCCAGTCCACTCACATCCTGCTCTCAACACCCGCACTGGATGCCGTCTTTACAGACCTGGAGATCCTGGCCGCTATCTTTGCAGCAGCCATCCATGATGTGGACCACCCAGGAGTCTCCAACCAGTTCCTAATTAATACCAACTCGGAGCTGGCTCTCATGTACAATGATGAGTCTGTTCTGGAGAACCATCACCTAGCGGTTGGCTTCAAGCTCTTGCAAGGGGAAAACTGTGATATCTTCCAAAACCTCACCAAGAAGCAACGCCAGACTCTCAGGAAGATGGTCATTGATATGGTACTAGCAACGGACATGTCCAAGCACATGAGCTTACTGGCTGACTTGAAGACGATGGTCGAGACTAAGAAAGTGACCAGTTCAGGAGTGCTGCTACTGGACAACTACACGGACCGGATACAGGTCTTACGAAATATGGTCCACTGTGCCGATCTCAGCAATCCCACCAAGCCATTAGACCTGTACCGGCAATGGACGGACCGCATTATGGAGGAGTTCTTCCACCAGGGtgaccgagagagagagcgaggcaTGGAGATCAGCCCGATGTGTGACAAACACACCGCTTCAGTGGAGAAGTCTCAGgttGGTTTCATTGATTACATCGTGCATCCACTATGGGAGACCTGGGCGGACCTGGTGCATCCGGATGCGCAGGATATCTTGGACACTTTAGAGGAGAACAGGAACTGGTACCACAGCATGATACCGCAGAGTCCCTCCCCTCCCTTCTTCGAAACGGGAACCGATGGCGGAGACAAGTTTCAGTTCGAGTTGGAGGTTGAGGAAGGAGCGAAGCTGGACTCAGAGAACCTCTTAGAGTCAGGCTGTGTGGAGATAGTGACGCATTCGCCTCCGTCCTCCGAGACGTAGCACCTCACTACAATGGCCGTCGTGTTGGCCATATTTGATGAGAGAGTAAAGCGGAGGAACGTTATTCTCCCGCTTCCTGAGAATCTCCCGCCGCGTCTCAGGACTCTGCTCTTGTTTCAGAGCCCGAATCTGGATCGAGCGAACATCCCACACAATCTAGCTGGAATTTGCAGGAATCCATTCATTGCCAGATGCGGAGGGACGGACTGCTGTACCGAAAGTGCCATAAGctggattttttaaaatcagacgTTACAGTTTGATGCGAATGTTAGGGTGGGTTTCTGTGAAGGCGAAAGGCTGACCCTCTGTTAAGAGGGCTTTGTACTAAAAAGCGacttttttgtaaagaaaagtgACTACTTTTTTGTACCTGTGTGTTCTTGTGTGACTTTTTTTGGTGTCACATCCAACTACTCCTTTGGAAACGTGAAAGATGCTGTCACGCCGAGAGCAAAAGCATGTAATTCCCATGCAGTCTTCCTAAATTTTGGACTTCAGAATAATCTAGTGCCAGCATACTTTATTCAAGTAATACAAAACCTTTGTATTTTGTAACGAACTGTTTCTCTTTTAAAAAGGCGTTCTTATTAAGCGATACGATTAATGTGACGTTTTATGtcgtattaaataaaaacaggatCCAAAGACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13054 lncRNA upstream 4748 2226905 ~ 2227251 (+) True G8707
TU13053 lncRNA upstream 9925 2221708 ~ 2222074 (+) True G8706
TU13046 lncRNA upstream 19390 2212258 ~ 2212609 (+) True G8701
TU13045 lncRNA upstream 19926 2211753 ~ 2212073 (+) True G8700
TU13035 lncRNA upstream 40551 2187357 ~ 2191448 (+) False LOC122358138
TU13062 lncRNA downstream 21821 2287346 ~ 2288216 (+) False sgip1b
TU13075 lncRNA downstream 22761 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA downstream 23300 2288825 ~ 2290040 (+) True G8717
TU13102 lncRNA downstream 178063 2443588 ~ 2445200 (+) True G8737
TU13085 lncRNA downstream 246097 2511622 ~ 2609519 (+) True G8724
XM_043257951.1 mRNA upstream 22776 2205194 ~ 2209223 (+) True LOC122358163
XM_043257930.1 mRNA upstream 44334 2178766 ~ 2187665 (+) False LOC122358138
XM_043257941.1 mRNA upstream 53834 2173372 ~ 2178165 (+) True LOC122358154
XM_043221484.1 mRNA upstream 75760 2083675 ~ 2156239 (+) False LOC122326519
XM_043257962.1 mRNA downstream 5154 2270679 ~ 2288172 (+) True sgip1b
XM_043220819.1 mRNA downstream 25938 2291463 ~ 2293495 (+) True LOC122326129
XM_043224306.1 mRNA downstream 44012 2309537 ~ 2316103 (+) True bcl6ab
XM_043258538.1 mRNA downstream 57186 2322711 ~ 2327443 (+) True LOC122358683
XM_043258628.1 mRNA downstream 125353 2390878 ~ 2391452 (+) True LOC122358767
XR_006252584.1 other upstream 42634 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 42634 2178766 ~ 2189365 (+) False LOC122358138
XR_006252350.1 other upstream 677885 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1403790 799932 ~ 828209 (+) False st6galnac5a
TU12283 other upstream 1781980 447162 ~ 450019 (+) False LOC122360757
TU13065 other downstream 5156 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 133429 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 145640 2411165 ~ 2419955 (+) False LOC122358652
TU13121 other downstream 282588 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 284367 2549892 ~ 2555321 (+) False zgc:55943

Expression Profile