RNA id: XM_043257941.1


Basic Information

Item Value
RNA id XM_043257941.1
length 1943
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122358154
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2173372 ~ 2178165 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCCTAAAACTGAATATTGCATGATGTTGTGGGCTCTGAATGTTGCAGTATTGAACGCTGGGATTTATAAAAGCCCGTATCAGGTCACCATCACCCTGCTTAATGATTAATAGGAGGAGGCCTATAAAGAACTGTGGGCTTCTGACTGTAAGAGCTGTGAGGACCATAGCAGTCTTAGTCTAAAGAAGCAACTATGAATCAGCTTGTGCTGTTGCTCCTTTTGGCATCATCTCATTCCTTCCCTACAGAACCCAGCGTTCCTGAACAACACACAGAGAGCCGCATACGCTTTGCTGCTCTGGACGAAGTCCGACTTTTAGCAAACGGCCTCCTACAGCTGGGCCATAGCCTCAGGGACTTTGTGCAGAATACCAAGAATCAAATCAATGATATTTTCCAAAAGCTTAATGTCTTTGACAAGTCCTTCTACCAACTTTCTGTGCTGGCCAGTGAGAtcaaggaggaggaggaggaactGAAGAAGACCACCGTGATCTTAAAGGCAAATAATGAGGAAATAAAGAGTCTGTCATGGGAGATTAACTCCAAAGTGGAAGATATCATAAAAGAGAGGACGCATCTGAGGAGACAGGTGGGCGGCTTGGAGGAGAAGTTAAGCAGTCTGTCCAAGAGTTTGCTCTCAGCTGAGCCGGTGGCTGAAATCTCCACGCTAAAGGAGATAATCCTGACCCAAGAAAAGAGCATCACTGATCTGCTGAAGGCTGTGAGTGAACAGAGCGAGCAGCTCAACAACCAAAGGACCAAAATCAAGGGTCTGGAAAATAAACTCAACTCTGCACATCTCCAGGAAACCGATGAAAATTTAGACAAGCACCAAAGCAACAGCCTCTCAGGATATCTACCGTACTCCACATCTGATGGGAGCTTCTCAAGCGATCTTCCAAAAGACTGTGCCGAGGTCTTCAGCCGAGGACAGAAATCCAGCGGCCTTTATGTTATTAAACCTGACGAGTCACAACCGTTTCTTGTGAAATGTGAATTCACTGAGGAGGGAGTGTTCACTGTCATCCAGCGCAGACATGACGGCTCTGTGGACTTCGACCAGTCCTGGGAGAAGTACGAGGATGGATTTGGGGACTTCAGCAGTGAGTTCTGGCTTGGGCTAAAGAAGATCTATGCCATTGCCCGTCAGGGACACTCACTCCTGCACGTTCAGATTGAGGACTGGAGGAAGGAGaagcacttttttcttttacagtacaTCCTGGAAGACGCCGTCTTCAACTACACTATCCATCTGAAGCTGCAGACTGGAGAGTCCAGCTCTGCTCTGGAGGAACACGCTGGCTTCAGGTTCTCCACCAAAGACCACAACGATGGAAACCCTGATCCGAAGTGCGCTCAAGACTACACAGGTGGATGGTGGTTTAGCGTTTGCGGCGACATTAACCTGAATGGCAAGTGTATTCAGAGCAGACCTCGTAAAAAGGGAACCCACTGGAAACCTGGCAGAGGAACCACCAGCTTCAAGGCCTCAAAAATCTCCATTAGTCATCTCACAAAGCCACAAACCCCTTAATATCAACAGTATGAGCAGAGGAACAGCATTGCATTCATGCTGAACAATTGCATCTTGGTTTTTACAAAGTAACTGTTTAACGGACATGATACAGTTTCCAATGTTGAGTATGAAACTATCAATATGATGCAGTAAAAATGGGACATTTACACCGATTAGTCCAGTGAGCTCCACATGATTCAGTTTCTCCACCAGTCGTcttaattacaatgtaataagTCCAACCAGAAACCTCTCATTTAACCTTCAGAGAGCCACTTTCAGCCATGTGTTTAAATGAGTCACGTTGACCTCTAGATGTCACGTGCACAGTTGTAcagcttttgttatttttgcactatttccaatacatgcattttttattcattactttgttgacattaaattctaaattatacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13034 lncRNA upstream 2552 2170596 ~ 2170820 (+) True G8691
TU13006 lncRNA upstream 117642 2053311 ~ 2055730 (+) True G8670
XR_006252239.1 lncRNA upstream 225010 1947128 ~ 1948362 (+) True LOC122355709
TU12886 lncRNA upstream 236613 1935914 ~ 1936759 (+) False arl14
XR_006253155.1 lncRNA upstream 243805 1925860 ~ 1929567 (+) True LOC122362698
TU13035 lncRNA downstream 9192 2187357 ~ 2191448 (+) False LOC122358138
TU13045 lncRNA downstream 33588 2211753 ~ 2212073 (+) True G8700
TU13046 lncRNA downstream 34093 2212258 ~ 2212609 (+) True G8701
TU13053 lncRNA downstream 43543 2221708 ~ 2222074 (+) True G8706
TU13054 lncRNA downstream 48740 2226905 ~ 2227251 (+) True G8707
XM_043221458.1 mRNA upstream 17133 2083675 ~ 2156239 (+) True LOC122326519
XM_043221475.1 mRNA upstream 17133 2083675 ~ 2156239 (+) False LOC122326519
XM_043221484.1 mRNA upstream 17133 2083675 ~ 2156239 (+) False LOC122326519
XM_043221465.1 mRNA upstream 17133 2083675 ~ 2156239 (+) False LOC122326519
XM_043253397.1 mRNA upstream 97335 2072770 ~ 2076037 (+) True ebna1bp2
XM_043257930.1 mRNA downstream 601 2178766 ~ 2187665 (+) False LOC122358138
XM_043257951.1 mRNA downstream 27029 2205194 ~ 2209223 (+) True LOC122358163
XM_043257912.1 mRNA downstream 34938 2213103 ~ 2265525 (+) True pde4bb
XM_043257920.1 mRNA downstream 53834 2231999 ~ 2265525 (+) False pde4bb
XM_043257962.1 mRNA downstream 92514 2270679 ~ 2288172 (+) True sgip1b
XR_006252350.1 other upstream 619258 1544773 ~ 1554114 (+) False rc3h1b
TU12491 other upstream 1345163 799932 ~ 828209 (+) False st6galnac5a
TU12282 other upstream 1723353 447162 ~ 450019 (+) False LOC122360757
TU12283 other upstream 1723353 447162 ~ 450019 (+) False LOC122360757
TU12245 other upstream 1950329 222045 ~ 223043 (+) False G8167
XR_006252584.1 other downstream 601 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other downstream 601 2178766 ~ 2189365 (+) False LOC122358138
TU13065 other downstream 92516 2270681 ~ 2275135 (+) False sgip1b
TU13086 other downstream 220789 2398954 ~ 2401745 (+) True G8725
XR_006252635.1 other downstream 233000 2411165 ~ 2419955 (+) False LOC122358652

Expression Profile