RNA id: XM_043258523.1


Basic Information

Item Value
RNA id XM_043258523.1
length 2338
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC122358652
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2406742 ~ 2419955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCTGAATGGTTTGAGGCTGGGAtttagtgcatttaaatgtactcGATGAACACATTCATTGCACGGAGAGCATTCACTCAGTATCGTTATCTAATCTCATTCTTGACCAAGATGGCTTTTAGAGGCTTTCGCATTTGAACTCTTCATATGTATTCCCATTGCATTTTGAGTTGAACTTCGATTTATAAAGTGGGAtgttttataattcattatagTCAAAACCGTTACACGCACGTCTTTATAAGCGAGGCTGTGGAGGTGGCAGGGGGCATCTCAATGGACAGGATGTGTTGAGTAGTGCTCCAGCACACACAGAGCAGGACTGTGTGCTTCTCCCCCCTCACCAGAGCCTCAGGGCTGCATAAGGCCGTCTGTGTGCGCTGTACAAGCCACCTCCGGCCAGCCTTCTCAATCACACCCAAACCTTCTGTTTGCCAACTCATGTTTGCATTGATGTAAATCTATTAAATTTAAACTCCCGGCTCCCTTTTTAATGACCTTGAGGCATTTTTCCCTAATCACTGTGTTTTTACCAGCTGTCGGTGTGCAAATAGTTATTTTCCTTTGTGAAAgcaaaactgcaaaatataGGATTACAACACCATATCACATCCTCCTTCTATCCGGCTGTGTGTCGGTGGGAGTGGCTCTTGTGGGCCTCTTCGCTCTATATTCAAGTCTGAGGCATGCTTTCTCAGTACCTGCACTGAAAGGATACTGtatctgctgaaaaaaaagactgtaatCTCTGCGATGACACCGCTGTGATGGTTTTAACTGGGaCTAAACAGGGAATCTCGTCCCTGTCCCCCGTCTCTGTATCAGCGGAGGTTTCCGGTATTTCCATGTCGTCCACCTCCTCACGACTGAAGTATGTTTCTCTGGGGGTGCTGGTGCTGCAGACCACCTCTCTGGTGCTGACGATGCGTTACTCTCGAACGCTGCAGTCTGACGGGCCGCGCTACCTGGCGTCGTCTGCCGTGGTGTGCGCCGAAGTCCTGAAGATCGCTGTATGCATGCTGCTGGTCTTCAGAGAACACAGTTTCAGTGTCCGTGCACTGAATCGGGTGTTGAAGGAGGAAGTGATCAACAAGCCTCTCCTAACGCTGAAGTTGGCCATTCCTTCAGGTATCTACACCCTGCAGAACAACCTGCTTTATGTGGCTCTGTCAAATCTAGATGCAGCTACGTACCAGGTTACATATCAGCTGAAAATTCTCACTACAGCCCTGTTCTCTGTGTCCATGCTGGGCAAAAGGCTTGGTATTTACCAGTGGCTCTCGCTGGTCATTCTGATGACTGGAATTGCACTTGTCCAGTGGCCAACTGAAGTTACCCCGAGCACCAAGCAGGAGGATCTGACGGCCGGCTCTCAGTTGATGGGTCTTCTCGCTGTGCTTGTGGCCTGCTTCTCCAGCGGATTTGCTGGCGTGTATTTCGAAAAGATCCTCAAAGAAAGCAAGCAGAGCGTCTGGATCCGTAACATCCAGCTAGGTTTATTTGGGCTGGTTTTTGGGCTCGGGGGAGTGTTTGCGTACGACGGAGAGCGAGTGCAGGAGAATGGACTCTTTCAAGGGTACAATGGTTTGACGTGGACTGTGGTGGCTCTCCAGGCTTTGGGTGGGTTAGTCATTGCAGCTGTCATCAAATATGCAGATAACATCCTGAAAGGCTTTGCCACGTCCATCTCAATCATTCTCTCCACCCTCATCTCTTATTTCTTGTTGGAAGATTTTGACCCCACAAGcGTGTTTTTCCTGGGTGCGATGCTGGTTATCGCTGCTACATTTCTCTACGGGTATGAGAGCACACCTGCCGTCAGCTCTAGTAAAGTCTAGAAGACCGGACTCAAGATGATAAACAGTCATCAGGAGATGCTCTACTTCAGCTGAAGTTCAAGGCTAGAGAACCGGTGATGCTGTAAGGATGCTATTAGAAGGTAGcgcaaaaaaaccccccaaacaTTCAACCGTCCTAAACCTGAGTTATATCATTTCATGAAATCAACAAGCTAACAGTAGTAATGAAACTCAAAAACGTCTTCTGATGCGTTCTGTGGCAGGACTGTTTGTCACACTCACCTGAAGACTTTAAGGACttcatttgaaatgtgtttacatataataaGAAACTCTGAAACAGAGCCTCACAGATTCAACATTTtagacttttatatttattttctgtgccATACGGGGGCATATCGAGAAGGAGATTGTTTTACTTGAATGTATCCTTCGAGAAACGCAATTTTTCTCGAGGCCAATAAAAAGTGTTTCTCAAATGTCTTCCTGTCAAATtctgataataaaaacaagttgAATCTGAAACTGAA

Function

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13075 lncRNA upstream 89982 2288286 ~ 2321187 (+) True G8716
TU13076 lncRNA upstream 121129 2288825 ~ 2290040 (+) True G8717
TU13062 lncRNA upstream 122953 2287346 ~ 2288216 (+) False sgip1b
TU13050 lncRNA upstream 157578 2249222 ~ 2253591 (+) True G8703
TU13054 lncRNA upstream 183918 2226905 ~ 2227251 (+) True G8707
TU13102 lncRNA downstream 23633 2443588 ~ 2445200 (+) True G8737
TU13085 lncRNA downstream 91667 2511622 ~ 2609519 (+) True G8724
TU13145 lncRNA downstream 192567 2612522 ~ 2613104 (+) True G8764
XR_006252229.1 lncRNA downstream 197252 2617207 ~ 2618878 (+) False LOC122355548
TU13126 lncRNA downstream 197313 2617268 ~ 2669597 (+) True LOC122355548
XM_043258628.1 mRNA upstream 19717 2390878 ~ 2391452 (+) True LOC122358767
XM_043258538.1 mRNA upstream 83726 2322711 ~ 2327443 (+) True LOC122358683
XM_043224306.1 mRNA upstream 95066 2309537 ~ 2316103 (+) True bcl6ab
XM_043220819.1 mRNA upstream 117674 2291463 ~ 2293495 (+) True LOC122326129
XM_043257962.1 mRNA upstream 122997 2270679 ~ 2288172 (+) True sgip1b
XM_043258550.1 mRNA downstream 7602 2427557 ~ 2431457 (+) True LOC122358704
XM_043261741.1 mRNA downstream 33895 2453850 ~ 2461222 (+) True LOC122360901
XM_043261780.1 mRNA downstream 75988 2495943 ~ 2510010 (+) True LOC122360938
XM_043254791.1 mRNA downstream 121960 2541915 ~ 2544563 (+) True imp3
XM_043254814.1 mRNA downstream 128111 2548066 ~ 2554174 (+) False zgc:55943
TU13086 other upstream 9424 2398954 ~ 2401745 (+) True G8725
TU13065 other upstream 136034 2270681 ~ 2275135 (+) False sgip1b
XR_006252584.1 other upstream 221804 2178766 ~ 2189365 (+) True LOC122358138
XR_006252583.1 other upstream 221804 2178766 ~ 2189365 (+) False LOC122358138
XR_006252350.1 other upstream 857055 1544773 ~ 1554114 (+) False rc3h1b
TU13121 other downstream 128158 2548113 ~ 2555321 (+) False zgc:55943
TU13123 other downstream 129937 2549892 ~ 2555321 (+) False zgc:55943
TU13124 other downstream 129937 2549892 ~ 2555321 (+) True zgc:55943
TU13140 other downstream 171679 2591634 ~ 2592758 (+) True G8760
TU13128 other downstream 197313 2617268 ~ 2669943 (+) False LOC122355548

Expression Profile